Information for 2-GAAAGATTTACTA (Motif 12)

A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A
Reverse Opposite:
A C G T C T G A A C T G C G A T C G T A C G T A C G T A A C G T A T G C A G C T A C G T A C G T A G T C
p-value:1e-11
log p-value:-2.572e+01
Information Content per bp:1.940
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.4 +/- 20.0bp
Average Position of motif in Background70.5 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAAAGATTTACTA-----
-NNNATTTTACGACNNTN
 A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0125.1_Obox5_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAAAGATTTACTA--
NANAGGGATTAATTATN
 A C G T A C G T A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0067.1_Hoxc12/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAAAGATTTACTA-----
-GNNNTTTTACGACCTNA
 A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAAAGATTTACTA--
--NTGATTTATGGCC
 A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A A C G T A C G T
A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAAAGATTTACTA
CNGTGATTTN---
 A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T

PH0123.1_Obox3/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAAAGATTTACTA-
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAAAGATTTACTA--
---DGWTTTATGRCN
 A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A A C G T A C G T
A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAAAGATTTACTA-----
--ANNTTTTACGACNTNN
 A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0047.1_Hoxa11/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAAAGATTTACTA-----
--NNGTTTTACGACTTTA
 A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

HNF1A/MA0046.2/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GAAAGATTTACTA
AGTTAATGATTAACT-
 A C G T A C G T A C G T A C T G C G T A C G T A C T G A A T C G C G T A A C G T A C G T A C G T C G T A A G T C A G C T C G T A
C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T A C G T