Information for 13-TCATGCCTGTATT (Motif 25)

C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T
Reverse Opposite:
C G T A C T G A C A G T C G T A G T A C C G T A C T A G T C A G T G A C C G T A A C G T A C T G C G T A
p-value:1e-8
log p-value:-1.908e+01
Information Content per bp:1.697
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.98%
Number of Background Sequences with motif93.5
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets50.3 +/- 20.6bp
Average Position of motif in Background54.3 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCATGCCTGTATT
TTCACGCATGAGTT
 A C G T C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TCATGCCTGTATT-
GTCATGCHTGRCTGS
 A C G T C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCATGCCTGTATT--
NNTNNTGTCTGGNNTNG
 A C G T A C G T C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TCATGCCTGTATT--
-----TTTTTATTGG
 C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

Foxo1/MA0480.1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TCATGCCTGTATT--
----TCCTGTTTACA
 C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A

PB0187.1_Tcf7_2/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TCATGCCTGTATT--------
------CCGTATTATAAACAA
 C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TCATGCCTGTATT--
------TTTTATTGC
 C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TCATGCCTGTATT
-----GCTGTG--
 C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

DUX4/MA0468.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TCATGCCTGTATT-
---TGATTAAATTA
 C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TCATGCCTGTATT-----
--NNANTTTTATTGGNNN
 C G A T G T A C T C G A C G A T A C T G A G T C A G T C A C G T A C T G C G A T G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G