Information for 2-GAATAKACAC (Motif 8)

A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C
Reverse Opposite:
A T C G A C G T C T A G C G A T T G C A A C G T T G C A A C G T G C A T T A G C
p-value:1e-10
log p-value:-2.429e+01
Information Content per bp:1.725
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.47%
Number of Background Sequences with motif367.8
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets52.7 +/- 23.6bp
Average Position of motif in Background49.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXH1/MA0479.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAATAKACAC
TCCAATCCACA-
 A C G T A C G T A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GAATAKACAC
GAATATTCAT
 A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAATAKACAC---
ATGAATATTCATGAG
 A C G T A C G T A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAATAKACAC-
SSAATCCACANN
 A C G T A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAATAKACAC
GHATATKCAT
 A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAATAKACAC
AAATAAACA-
 A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAATAKACAC--
-AATAAACAATN
 A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C A C G T A C G T
A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAATAKACAC
WWATRTAAACAN
 A C G T A C G T A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C
G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A

FOXL1/MA0033.2/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GAATAKACAC
--GTAAACA-
 A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C
A C G T A C G T C T A G G A C T T G C A G T C A T G C A A G T C G T C A A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAATAKACAC-
WWTRTAAACAVG
 A C G T A T C G C G T A G T C A A C G T G T C A A C G T G C T A G A T C G T C A A T G C A C G T
C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G