Information for 1-CCCTCAGCGT (Motif 3)

A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T
Reverse Opposite:
C T G A T G A C A T C G G A T C C G A T A C T G C T G A C T A G A T C G T C A G
p-value:1e-12
log p-value:-2.918e+01
Information Content per bp:1.719
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif9.91%
Number of Background Sequences with motif1916.7
Percentage of Background Sequences with motif4.01%
Average Position of motif in Targets49.4 +/- 24.9bp
Average Position of motif in Background49.1 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCCTCAGCGT--
GCCTCAGGGCAT
 A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T A C G T A C G T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCCTCAGCGT
AGCCACTCAAG--
 A C G T A C G T A C G T A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCCTCAGCGT--
SCCTSAGGSCAW
 A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T A C G T A C G T
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCCTCAGCGT-
-DCTCAGCAGG
 A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T A C G T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Mafb/MA0117.2/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCCTCAGCGT---
-NGTCAGCANTTT
 A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T A C G T A C G T A C G T
A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

GLIS2/MA0736.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCCTCAGCGT--
GACCCCCCGCGAAG
 A C G T A C G T A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T A C G T A C G T
A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCCTCAGCGT---
--GTCAGCANNTN
 A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T A C G T A C G T A C G T
A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCCTCAGCGT
--CACAGN--
 A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCAGCGT-
TGCCCNNAGGGCA
 A C G T A C G T A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCTCAGCGT-
TGCCCTNAGGGCA
 A C G T A C G T A G T C T A G C A G T C G A C T A G T C G C T A C T A G T A G C A C T G G A C T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A