Information for 2-GCGAGCACAGSCA (Motif 2)

A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A
Reverse Opposite:
A C G T A C T G T A C G A G T C A C G T A C T G A C G T A C T G A G T C A G C T T G A C C T A G A T G C
p-value:1e-13
log p-value:-3.205e+01
Information Content per bp:1.836
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.3 +/- 29.1bp
Average Position of motif in Background37.8 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCGAGCACAGSCA
CCAGGAACAG---
 A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GCGAGCACAGSCA
-----CACAGN--
 A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCGAGCACAGSCA-
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCGAGCACAGSCA
-AAACCACAGC--
 A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCGAGCACAGSCA
---TGCCCAGNHW
 A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCGAGCACAGSCA
NWAACCACADNN-
 A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCGAGCACAGSCA
-AAACCACAGAN-
 A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCGAGCACAGSCA-
--GGCCACACCCAN
 A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A A C G T
A C G T A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCGAGCACAGSCA
NAAACCACAG---
 A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCGAGCACAGSCA----
-CAATCACTGGCAGAAT
 A T C G A G T C A C T G C T G A A C T G A G T C C G T A A G T C C G T A A C T G A T G C A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T