Information for 10-CCCGTGGCCACGG (Motif 16)

A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G A C G T A C T G C T A G A G T C A G T C C G T A A T G C A C T G A C T G A T C G
p-value:1e-8
log p-value:-1.947e+01
Information Content per bp:1.903
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 24.3bp
Average Position of motif in Background89.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCCGTGGCCACGG-
TACCATAGCAACGGT
 A C G T A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCCGTGGCCACGG
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCGTGGCCACGG
TCACCTCTGGGCAG--
 A C G T A C G T A C G T A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCCGTGGCCACGG-
CCGCATAGCAACGGA
 A C G T A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCCGTGGCCACGG---
--NGTTGCCATGGCAA
 A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCCGTGGCCACGG----
-CGGTTGCCATGGCAAC
 A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCCGTGGCCACGG-----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCCGTGGCCACGG-----
--CGTTGCCATGGCAACN
 A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Mycn/MA0104.3/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCCGTGGCCACGG
CACGTGGC-----
 A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G
A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C A C G T A C G T A C G T A C G T A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCCGTGGCCACGG
TCACGTGACC----
 A C G T A T G C A G T C G T A C A T C G A C G T A C T G C T A G A G T C A G T C C G T A A G T C A C T G A C T G
A G C T A G T C G T C A A G T C C T A G A C G T A T C G T C G A A G T C A T G C A C G T A C G T A C G T A C G T