Information for 6-GCAGGCGGGCAGG (Motif 13)

A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G
Reverse Opposite:
G T A C A T G C A G C T A C T G A G T C A T G C A G T C T C A G A T G C A G T C G C A T A T C G T A G C
p-value:1e-8
log p-value:-2.042e+01
Information Content per bp:1.783
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.18%
Number of Background Sequences with motif355.2
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets48.5 +/- 23.7bp
Average Position of motif in Background51.3 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCAGGCGGGCAGG
-CWGGCGGGAA--
 A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G
A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCAGGCGGGCAGG--
SCAGYCADGCATGAC
 A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

E2F6/MA0471.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCAGGCGGGCAGG
--GGGCGGGAAGG
 A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G
A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

E2F4/MA0470.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCAGGCGGGCAGG
--GGGCGGGAAGG
 A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G
A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCAGGCGGGCAGG
---TNNGGGCAG-
 A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCAGGCGGGCAGG
BTKGGCGGGAAA-
 A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G
A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCAGGCGGGCAGG
---GGCGGGAARN
 A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G
A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCAGGCGGGCAGG
---NGTGGGCAT-
 A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G
A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCAGGCGGGCAGG----
GGAAGGAAGGAAGGAAGG
 A C G T A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCAGGCGGGCAGG---
GCAGCCAAGCGTGACN
 A T C G A T G C C G T A A C T G A T C G A G T C C T A G A T C G A C T G T G A C T C G A A T C G A C T G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C