Information for 1-GCAAGTGGGC (Motif 5)

A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C
Reverse Opposite:
T A C G A G T C A G T C G T A C G C T A A T G C A G C T A C G T A C T G A G T C
p-value:1e-10
log p-value:-2.423e+01
Information Content per bp:1.773
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.39%
Number of Background Sequences with motif578.8
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets49.7 +/- 23.6bp
Average Position of motif in Background50.5 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCAAGTGGGC--
NTGCCCTTGGGCGN
 A C G T A C G T A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C A C G T A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCAAGTGGGC
AAGGCAAGTGT--
 A C G T A C G T A C G T A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAAGTGGGC-
TGTCAGGGGGCG
 A C G T A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C A C G T
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCAAGTGGGC--
TCACCTCTGGGCAG
 A C G T A C G T A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C A C G T A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCAAGTGGGC
SDGCAGGTGCNS
 A C G T A C G T A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAAGTGGGC
NTCAAGTGGN-
 A C G T A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAAGTGGGC
VCAGCTGBNN
 A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C
T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAAGTGGGC-
TGCCCNGGGGCA
 A C G T A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C A C G T
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAAGTGGGC
CGCAGCTGCG-
 A C G T A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAAGTGGGC------
NNNAAGGGGGCGGGNNN
 A C G T A C T G A G T C G T C A C T G A A T C G C G A T A C T G T C A G C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C