Information for 18-YTCAGTSTAAAAA (Motif 33)

A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T C G A T A C G T A C G T A G C T C G T A A T G C C G T A A G T C A C G T A C T G C G T A C T A G
p-value:1e-6
log p-value:-1.485e+01
Information Content per bp:1.911
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.7 +/- 23.3bp
Average Position of motif in Background85.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:YTCAGTSTAAAAA---
-NCWRWGTAAACANSV
 A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Foxa2/MA0047.2/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:YTCAGTSTAAAAA
-NCTAAGTAAACA
 A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:YTCAGTSTAAAAA----
--CAAAGTAAACANNNN
 A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:YTCAGTSTAAAAA--
---TATGTAAACANG
 A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--YTCAGTSTAAAAA--
NNNVCTGWGYAAACASN
 A C G T A C G T A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:YTCAGTSTAAAAA--
---WWTRTAAACAVG
 A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:YTCAGTSTAAAAA------
----GTATAAAAGGCGGGG
 A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:YTCAGTSTAAAAA------
----GTATAAAAGGCGGGG
 A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

FOXB1/MA0845.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:YTCAGTSTAAAAA-
---TATGTAAATAT
 A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:YTCAGTSTAAAAA
---AAAGTAAACA
 A G T C A C G T A G T C C G T A A C T G A C G T A T C G A C G T C T G A C G T A C G T A C G T A C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A