Information for 23-CGGTAGCTCACAGCCA (Motif 40)

A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A
Reverse Opposite:
A C G T A T C G A T C G A G T C A C G T A C T G A C G T A C T G C G T A A T C G A G T C A G C T C G T A A G T C A G T C A C T G
p-value:1e-6
log p-value:-1.429e+01
Information Content per bp:1.910
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.7 +/- 22.0bp
Average Position of motif in Background22.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CGGTAGCTCACAGCCA-
---TGGCAGNCTGCCAG
 A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A A C G T
A C G T A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CGGTAGCTCACAGCCA
ATGTACAGTAGCAAAG-----
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:CGGTAGCTCACAGCCA
--------CACAGN--
 A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CGGTAGCTCACAGCCA
ATTTACAGTAGCAAAA-----
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CGGTAGCTCACAGCCA--
--TTGGCANNNTGCCAAG
 A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A A C G T A C G T
A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CGGTAGCTCACAGCCA
----AGGTCAAGGTCA
 A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A
A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CGGTAGCTCACAGCCA
---TGAGTGACAGSC-
 A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CGGTAGCTCACAGCCA-
---TGGCACCATGCCAA
 A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A A C G T
A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

FOSL2/MA0478.1/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CGGTAGCTCACAGCCA
GGATGACTCAT-----
 A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A
A C T G T C A G C T G A A C G T A C T G T C G A A T G C A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:forward strand
Alignment:CGGTAGCTCACAGCCA
----AAATCACAGCA-
 A G T C A C T G A C T G A C G T C T G A C T A G A T G C A C G T A G T C C G T A A G T C G T C A A C T G A T G C A T G C T C G A
A C G T A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T