Information for 21-AACATTGGCCACC (Motif 38)

C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G A C T G A G T C A G T C C G T A C G T A A C G T A C T G A C G T A C G T
p-value:1e-6
log p-value:-1.429e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 30.6bp
Average Position of motif in Background54.7 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AACATTGGCCACC
GAACAATGGN----
 A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AACATTGGCCACC
VRAACAATGG-----
 A C G T A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AACATTGGCCACC
GAACAATGG-----
 A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AACATTGGCCACC
CCGATTGGCT---
 C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AACATTGGCCACC
-TGATTGGCTANN
 C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AACATTGGCCACC
AACAAAGG-----
 C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AACATTGGCCACC
RAACAATGGN----
 A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AACATTGGCCACC
----TTGGCA---
 C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AACATTGGCCACC---
NNNNTTGGGCACNNCN
 C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AACATTGGCCACC
---NTTGGCANN-
 C G T A C G T A A G T C C G T A A C G T A C G T A C T G A C T G A G T C A G T C C G T A A G T C A G T C
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T