Information for 12-CATTAGCTCA (Motif 24)

A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A A C T G G T A C G A C T T G C A C G T A C G A T T A C G
p-value:1e-7
log p-value:-1.789e+01
Information Content per bp:1.844
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif55.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets33.1 +/- 28.5bp
Average Position of motif in Background55.2 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0045.1_Hoxa1/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CATTAGCTCA-
ACGGTAATTAGCTCAG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A A C G T
T C G A T G A C C T A G A C T G A G C T G T C A C G T A A C G T A C G T C T G A T A C G A G T C G A C T G A T C C T G A C T A G

PH0081.1_Pdx1/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CATTAGCTCA-
AAGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A A C G T
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T

PH0058.1_Hoxb3/Jaspar

Match Rank:3
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------CATTAGCTCA
TNNNACTAATTAGNTCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A
G C A T G A T C A G T C G T C A T C G A A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A T G C A C G T A G T C C G T A

PH0049.1_Hoxa2/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CATTAGCTCA-
AAGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A A C G T
C T G A T G C A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A T A C G G A T C G A C T G T A C C G T A C G A T

Hoxb5/MA0904.1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CATTAGCTCA-
ACGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CATTAGCTCA-
ACGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0036.1_Gsx2/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CATTAGCTCA-
AGGTTAATTAGCTGAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A A C G T
T C G A T A C G C T A G A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G G A T C A G C T A T C G C T G A C A G T

PH0009.1_Bsx/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CATTAGCTCA-
CAGGTAATTACCTCAG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A A C G T
T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G

JUND(var.2)/MA0492.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CATTAGCTCA-----
NATGACATCATCNNN
 A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C T G T C G A A C G T A C T G C T G A A G T C T C G A A C G T G T A C C G T A A G C T A G T C G C A T G A C T G C A T

Hoxd3/MA0912.1/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----CATTAGCTCA-
ANGNTAATTANCNCAN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C T G A A C T G A G T C A C G T A T G C C G T A A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A