Information for 19-CTTTTAATTAAAADCH (Motif 39)

G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
Reverse Opposite:
C A T G T C A G G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T G T C A C T G A G T C A C G T A C T A G
p-value:1e-4
log p-value:-1.063e+01
Information Content per bp:1.792
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 19.6bp
Average Position of motif in Background50.3 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0001.1_Arid3a_1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-CTTTTAATTAAAADCH
GGGTTTAATTAAAATTC
 A C G T G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

PH0100.1_Lmx1a/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CTTTTAATTAAAADCH
CGAATTAATTAAAAACC
 A C G T G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C

PH0101.1_Lmx1b/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTAATTAAAADCH
NNAATTAATTAAAAANN
 A C G T G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T

LMX1A/MA0702.1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CTTTTAATTAAAADCH
---TTAATTAA-----
 G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
A C G T A C G T A C G T A G C T G A C T C T G A G C T A G C A T C G A T C T G A T C G A A C G T A C G T A C G T A C G T A C G T

ALX3/MA0634.1/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTTTTAATTAAAADCH
--TCTAATTAAA----
 G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
A C G T A C G T G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A A C G T A C G T A C G T A C G T

Lhx4/MA0704.1/Jaspar

Match Rank:6
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CTTTTAATTAAAADCH
---TTAATTAA-----
 G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
A C G T A C G T A C G T A G C T G A C T T G C A C G T A A C G T A G C T C T G A T C G A A C G T A C G T A C G T A C G T A C G T

MNX1/MA0707.1/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CTTTTAATTAAAADCH
--GGTAATTAAA----
 G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
A C G T A C G T C T A G T A C G A G C T G T C A G T C A G A C T C G A T C G T A C G T A G T C A A C G T A C G T A C G T A C G T

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:8
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTTTTAATTAAAADCH
---YTAATTARNN---
 G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
A C G T A C G T A C G T A G T C G A C T T G C A G T C A A C G T A C G T C T G A T C A G G T A C G C A T A C G T A C G T A C G T

PH0091.1_Lhx1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTTTTAATTAAAADCH
CGAATTAATTAATAATG
 A C G T G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
T G A C T C A G C G T A C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C A T G C T A G C T A G A C T A C T G

PH0095.1_Lhx5/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTTTTAATTAAAADCH
CGAATTAATTAAATACT
 A C G T G A T C A C G T A C G T G A C T A C G T G T C A C G T A A C G T A C G T C G T A C T G A C G T A C G T A C A T G A G T C G A T C
T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T