Information for 14-TTVCCATGGCAAC (Motif 28)

A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C
Reverse Opposite:
C T A G A C G T A C G T A C T G A G T C A G T C C G T A A G C T A C T G A C T G A G T C C G T A T C G A
p-value:1e-7
log p-value:-1.774e+01
Information Content per bp:1.844
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif12.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets39.0 +/- 21.4bp
Average Position of motif in Background53.8 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:TTVCCATGGCAAC-
TTGCCATGGCAACN
 A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TTVCCATGGCAAC-
TTGCCATGGCAACC
 A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-TTVCCATGGCAAC
GTTGCCATGGCAAC
 A C G T A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TTVCCATGGCAAC
KGTTGCCATGGCAAC
 A C G T A C G T A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-TTVCCATGGCAAC--
GTTGCCATGGCAACCG
 A C G T A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX5/MA0510.2/Jaspar

Match Rank:6
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--TTVCCATGGCAAC-
NGTTGCCATGGCAACG
 A C G T A C G T A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--TTVCCATGGCAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TTVCCATGGCAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--TTVCCATGGCAAC-
CGTTGCCATGGCAACG
 A C G T A C G T A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C A C G T
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.82
Offset:1
Orientation:forward strand
Alignment:TTVCCATGGCAAC---
-TACCATAGCAACGGT
 A G C T C G A T T A C G G T A C A G T C C T G A A C G T A C T G A C T G A G T C C G T A G T C A A G T C A C G T A C G T A C G T
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T