Information for 5-AGGGCAAGAC (Motif 31)

T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C
Reverse Opposite:
T C A G C A G T A G T C A G C T C A G T A C T G A T G C A T G C G A T C A G C T
p-value:1e-7
log p-value:-1.822e+01
Information Content per bp:1.653
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif11.67%
Number of Background Sequences with motif2907.5
Percentage of Background Sequences with motif5.99%
Average Position of motif in Targets50.1 +/- 27.2bp
Average Position of motif in Background50.6 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAAGAC
TNNGGGCAG---
 A C G T A C G T T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAGAC-
AGGTGHCAGACA
 A C G T T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGGCAAGAC-
AAGGCAAGTGT
 T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAGAC
TRAGGTCA----
 A C G T A C G T T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAGAC
CAAGGHCANV--
 A C G T A C G T T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----AGGGCAAGAC-
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGGGCAAGAC--
AGGTGNCAGACAG
 A C G T T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGGGCAAGAC
GAAAGTGAAAGT-
 A C G T A C G T A C G T T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGGCAAGAC--
AGGTCAAGGTCA
 T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGGGCAAGAC--
----CCAGACAG
 T C G A C T A G T A C G T A C G T G A C G T C A T C G A T C A G G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G