Information for 1-GGCGCCAGGCCGC (Motif 1)

A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C C T A G A C T G A G T C A G T C A C G T A T C G C T A G A G T C A T C G A G T C A G T C
p-value:1e-16
log p-value:-3.830e+01
Information Content per bp:1.897
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.6 +/- 25.1bp
Average Position of motif in Background37.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GGCGCCAGGCCGC
----CTAGGCCT-
 A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C
A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GGCGCCAGGCCGC------
-----CAGGCCNNGGCCNN
 A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCAGGCCGC
AGCTCGGCGCCAAAAGC-
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GGCGCCAGGCCGC
----CNAGGCCT-
 A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C
A C G T A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCAGGCCGC
CCTTCGGCGCCAAAAGG-
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGCGCCAGGCCGC
GGGGGCGGGGCC--
 A C G T A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCGCCAGGCCGC
AGGTGNCAGACAG-
 A C G T A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

E2F1/MA0024.3/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGCGCCAGGCCGC
TTTGGCGCCAAA----
 A C G T A C G T A C G T A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGCGCCAGGCCGC--
-GTGCCACGCGACTG
 A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C A C G T A C G T
A C G T A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCGCCAGGCCGC
AGGTGHCAGACA--
 A C G T A C T G C T A G A T G C A C T G A G T C A T G C C G T A A C T G A C T G A G T C A G T C A C T G A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T