Information for 3-AAGGTCTGGCGGC (Motif 10)

C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C
Reverse Opposite:
A C T G A G T C A G T C A C T G T G A C A G T C C G T A A C T G C T G A A T G C A G T C A C G T A C G T
p-value:1e-9
log p-value:-2.219e+01
Information Content per bp:1.927
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.5 +/- 22.1bp
Average Position of motif in Background56.3 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AAGGTCTGGCGGC
--GGTCTGGCAT-
 C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AAGGTCTGGCGGC-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AAGGTCTGGCGGC
TCAAGGTCAN-----
 A C G T A C G T C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAGGTCTGGCGGC
-CTGTCTGG----
 C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAGGTCTGGCGGC
-AGGCCTNG----
 C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGGTCTGGCGGC
CAAAGGTCAAGGG--
 A C G T A C G T C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAGGTCTGGCGGC-----
-NAGANTGGCGGGGNGNA
 C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAGGTCTGGCGGC-
--TGTCTGDCACCT
 C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAGGTCTGGCGGC
TCAAGGTCAT-----
 A C G T A C G T C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AAGGTCTGGCGGC
TATTCAAGGTCATGCGA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T C G A G C T A G T C C G A T A C T G A C T G A G T C C T A G A C T G G T A C
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A A C G T