Information for 3-GGATAATTCA (Motif 18)

A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A
Reverse Opposite:
A C G T A C T G C G T A C G T A C G A T A G C T T C G A A C G T A T G C A G T C
p-value:1e-9
log p-value:-2.097e+01
Information Content per bp:1.858
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.48%
Number of Background Sequences with motif101.7
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets42.6 +/- 19.4bp
Average Position of motif in Background46.7 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GGATAATTCA
ATGCATAATTCA
 A C G T A C G T A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GGATAATTCA---
ATGAATWATTCATGA
 A C G T A C G T A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A A C G T A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGATAATTCA---
ATGCATWATGCATRW
 A C G T A C G T A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A A C G T A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

POU4F1/MA0790.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGATAATTCA--
ATGAATAATTAATG
 A C G T A C G T A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A A C G T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGATAATTCA----
ATGCATAATTAATGAG
 A C G T A C G T A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A A C G T A C G T A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGATAATTCA
-AATAATT--
 A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A
A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGATAATTCA----
ATGCATAATTAATGAG
 A C G T A C G T A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A A C G T A C G T A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GGATAATTCA--
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

HESX1/MA0894.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGATAATTCA-
-GCTAATTGGC
 A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A A C G T
A C G T T C A G G A T C C G A T C T G A T C G A A C G T A G C T C T A G T C A G G A T C

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GGATAATTCA
NNCNNAACAATTNT
 A C G T A C G T A C G T A C G T A C T G T A C G C G T A A C G T C T G A C G T A A C G T A C G T A G T C G T C A
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T