Information for 5-GACAGTGGGGGCTATT (Motif 13)

C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A C G A T C G T A A C T G A G T C G T A C A T G C A G T C A G T C G C T A A G T C A C G T A C T G A C G T A G T C
p-value:1e-15
log p-value:-3.648e+01
Information Content per bp:1.873
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.2 +/- 22.6bp
Average Position of motif in Background59.3 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC1/MA0696.1/Jaspar

Match Rank:1
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GACAGTGGGGGCTATT
CACAGCGGGGGGTC--
 C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GACAGTGGGGGCTATT
-ACAAAGGNBCCT---
 C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GACAGTGGGGGCTATT
NNTNNACAATGGGANNN---
 A C G T A C G T A C G T A C G T C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GACAGTGGGGGCTATT
NCNCAGCGGGGGGTC--
 A C G T C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GACAGTGGGGGCTATT
NCGCAGCGGGGGGTC--
 A C G T C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GACAGTGGGGGCTATT
NNNNTGCCAGTGATTG-----
 A C G T A C G T A C G T A C G T A C G T C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G A C G T A C G T A C G T A C G T A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GACAGTGGGGGCTATT
CACGGCAGTTGGTNN----
 A C G T A C G T A C G T C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GACAGTGGGGGCTATT
GAACAATGGN-------
 A C G T C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GACAGTGGGGGCTATT
AACAAAGG--------
 C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GACAGTGGGGGCTATT-
NNNATTGGGGGTNTCCT
 C T A G G T C A A G T C C G T A A C T G C G A T C T A G C T A G A T C G A C T G A C T G T G A C C G A T C G T A A C G T A C G T A C G T
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T