Information for 2-TGCTGCTTCGCCACGA (Motif 3)

A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A
Reverse Opposite:
G C A T T A G C A C T G A C G T C T A G A C T G A G T C A C T G G T C A C T G A A C T G A G T C T C G A A C T G A G T C G T C A
p-value:1e-21
log p-value:-4.837e+01
Information Content per bp:1.875
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.2 +/- 17.1bp
Average Position of motif in Background9.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGCTGCTTCGCCACGA
TGTTKCCTAGCAACM-
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGCTGCTTCGCCACGA
----GCTTCC------
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TGCTGCTTCGCCACGA-----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGCTGCTTCGCCACGA-
--CCGCATAGCAACGGA
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A A C G T
A C G T A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

MAFG/MA0659.1/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGCTGCTTCGCCACGA-
AAATTGCTGAGTCAGCATATT
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A A C G T
C G T A C G T A G C T A C G A T G A C T T A C G G T A C G A C T C A T G G C T A A T C G C A G T G T A C C T G A C A T G A T G C C T G A G C A T C G T A G C A T G C A T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TGCTGCTTCGCCACGA
----GCTCCGCCCMCY
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A
A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

Sp1(Zf)/Promoter/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:TGCTGCTTCGCCACGA
---GGCCCCGCCCCC-
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A
A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TGCTGCTTCGCCACGA-
--TACCATAGCAACGGT
 A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A A C G T
A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGCTGCTTCGCCACGA--
WNTGCTGASTCAGCANWTTY
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A A C G T A C G T
C G T A G A C T C G A T A T C G G T A C G C A T C A T G C G T A T A C G G C A T G T A C C G T A C A T G A T G C G C T A C T A G G C A T G C A T G C A T G A C T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:10
Score:0.50
Offset:-11
Orientation:forward strand
Alignment:-----------TGCTGCTTCGCCACGA
ACTYKNATTCGTGNTACTTC-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A G C T A C G T A G T C A C T G A G T C A G T C C G T A A G T C A C T G C G T A
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T