Information for 3-GGGAACTTTSCCT (Motif 6)

A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T
Reverse Opposite:
C G T A A C T G A C T G A T G C C T G A C T G A C G T A C A T G C G A T A C G T A G T C A G T C T G A C
p-value:1e-12
log p-value:-2.856e+01
Information Content per bp:1.776
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif11.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.7 +/- 21.2bp
Average Position of motif in Background42.4 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGGAACTTTSCCT
-GGAAATTCCC--
 A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGGAACTTTSCCT
NGGGGATTTCCC--
 A C G T A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGGAACTTTSCCT
-GGAAATTCCC--
 A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GGGAACTTTSCCT---
----ACTTTCACTTTC
 A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGGAACTTTSCCT
-GGAAATCCCC--
 A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GGGAACTTTSCCT
TTAAGAGGAAGTTA----
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C A C G T A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGGAACTTTSCCT--
-TGACCTTTGCCCCA
 A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGGAACTTTSCCT--
-TGACCTTTGCCCTA
 A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T A C G T A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

HNF4G/MA0484.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGGAACTTTSCCT---
-TGGACTTTGNNCTCN
 A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGGAACTTTSCCT
-TGACCTTTNCNT
 A C T G C T A G A C T G C G T A C G T A G T A C A C G T A G C T A G C T A T C G A G T C A G T C G C A T
A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T