Information for 9-TTCCCTTGTT (Motif 41)

A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T
Reverse Opposite:
G T C A T G C A A T G C C G T A C G T A T A C G A C T G C A T G C G T A C G T A
p-value:1e-8
log p-value:-2.030e+01
Information Content per bp:1.838
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.74%
Number of Background Sequences with motif247.4
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets47.4 +/- 22.9bp
Average Position of motif in Background48.5 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:TTCCCTTGTT
--CCTTTGTT
 A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TTCCCTTGTT-----
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TTCCCTTGTT-
-NCCATTGTTC
 A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--TTCCCTTGTT-----
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TTCCCTTGTT
--CCWTTGTY
 A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T
A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TTCCCTTGTT--
--CCATTGTTYB
 A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TTCCCTTGTT--
--CCWTTGTYYB
 A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TTCCCTTGTT--
--YCTTTGTTCC
 A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTCCCTTGTT-
-NCCATTGTTY
 A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T A C G T
A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TTCCCTTGTT--
--CCATTGTTNY
 A C G T G C A T G T A C A G T C A T G C A C G T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T