Information for 19-AGBSCSTTATGCTMAT (Motif 38)

C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T
Reverse Opposite:
T G C A A G C T A C G T C G T A C T A G A T G C C G T A A G C T C G T A C G T A T A G C C A T G A T G C T C A G G T A C C G A T
p-value:1e-9
log p-value:-2.193e+01
Information Content per bp:1.677
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif33.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets47.3 +/- 25.5bp
Average Position of motif in Background51.1 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F1/MA0786.1/Jaspar

Match Rank:1
Score:0.65
Offset:6
Orientation:forward strand
Alignment:AGBSCSTTATGCTMAT--
------TTATGCAAATTA
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:2
Score:0.65
Offset:6
Orientation:forward strand
Alignment:AGBSCSTTATGCTMAT--
------TTATGCAAATTA
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:3
Score:0.64
Offset:7
Orientation:forward strand
Alignment:AGBSCSTTATGCTMAT
-------TATGCAAAT
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

POU3F3/MA0788.1/Jaspar

Match Rank:4
Score:0.63
Offset:5
Orientation:forward strand
Alignment:AGBSCSTTATGCTMAT--
-----ATTATGCTAATTT
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:forward strand
Alignment:AGBSCSTTATGCTMAT-
-----AATATGCAAATT
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:AGBSCSTTATGCTMAT
------TTATGCAAAT
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.60
Offset:7
Orientation:forward strand
Alignment:AGBSCSTTATGCTMAT
-------TATGCAAAT
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGBSCSTTATGCTMAT----
----TTGTATGCAAATTAGA
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.59
Offset:7
Orientation:forward strand
Alignment:AGBSCSTTATGCTMAT---
-------TATGCWAATBAV
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGBSCSTTATGCTMAT----
----TTGTATGCAAATTAGA
 C G T A A C T G A G C T A T C G G A T C A T C G A C G T A C G T T C G A C G A T A T C G A G T C C G A T T G C A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A