Information for 1-CGCAGCACCTAAC (Motif 3)

A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T G T C A A C T G A T C G A C G T A C T G A G T C A G C T A C T G A G T C A C T G
p-value:1e-13
log p-value:-3.137e+01
Information Content per bp:1.892
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.5 +/- 18.7bp
Average Position of motif in Background77.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGCAGCACCTAAC
CGCAGCTGCG---
 A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGCAGCACCTAAC-
NNGGCGACACCTCNNN
 A C G T A C G T A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCACCTAAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCACCTAAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGCAGCACCTAAC---
CGAAGCACACAAAATA
 A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

POL011.1_XCPE1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGCAGCACCTAAC
GGGCGGGACC----
 A C G T A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C
A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCACCTAAC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CGCAGCACCTAAC
ADGGYAGYAGCATCT---
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCACCTAAC
CCGCATAGCAACGGA-
 A C G T A C G T A C G T A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CGCAGCACCTAAC
--TGACACCT---
 A G T C A C T G A G T C C T G A A C T G A G T C C G T A A T G C A G T C A C G T G T C A C G T A A G T C
A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T