Information for 11-CKGCGYCGGRTAC (Motif 20)

A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A G C T A G T C A G T C A C T G T C G A A G T C A C T G A G T C G T C A A C T G
p-value:1e-11
log p-value:-2.544e+01
Information Content per bp:1.896
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.6 +/- 29.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CKGCGYCGGRTAC---
-TCCGTCGCTTAAAAG
 A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

PB0156.1_Plagl1_2/Jaspar

Match Rank:2
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CKGCGYCGGRTAC-----
-GCTGGGGGGTACCCCTT
 A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CKGCGYCGGRTAC-----
-CTACTTGGATACGGAAT
 A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

DMRT3/MA0610.1/Jaspar

Match Rank:4
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CKGCGYCGGRTAC---
-----NTTGATACATT
 A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CKGCGYCGGRTAC
-GGCGCGCT----
 A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---CKGCGYCGGRTAC
NCGCAGCGGGGGGTC-
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:7
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CKGCGYCGGRTAC------
--ACTCCAAGTACTTGGAA
 A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:CKGCGYCGGRTAC-
----RCCGGAARYN
 A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C A C G T
A C G T A C G T A C G T A C G T T C G A T A G C T G A C C T A G C A T G G C T A G C T A T C A G G A C T C T A G

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:9
Score:0.49
Offset:4
Orientation:forward strand
Alignment:CKGCGYCGGRTAC
----GGCVGTTR-
 A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C
A C G T A C G T A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:CKGCGYCGGRTAC-
----DCCGGAARYN
 A G T C A C G T A C T G A G T C A C T G A G C T G T A C A C T G A C T G C T G A A C G T C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C T G A T A G C T G A C T A C G C T A G G T C A G C T A T C A G G A C T T C A G