Information for 2-GCACGCAGYCATTTTC (Motif 2)

A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
Reverse Opposite:
A C T G C G T A G T C A T G C A G T C A A C G T C T A G C T A G A G T C A C G T A C T G A G T C C T A G C A G T A T C G A G T C
p-value:1e-14
log p-value:-3.261e+01
Information Content per bp:1.766
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 26.6bp
Average Position of motif in Background48.8 +/- 15.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GCACGCAGYCATTTTC
----GCNGCCATCTTG
 A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
A C G T A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GCACGCAGYCATTTTC
----GCCGCCATCTTG
 A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
A C G T A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCACGCAGYCATTTTC
---CACAGN-------
 A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GCACGCAGYCATTTTC
-------GTCATN---
 A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCACGCAGYCATTTTC
----BCAGACWA----
 A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCACGCAGYCATTTTC
CTGGCAGNCTGCCA-----
 A C G T A C G T A C G T A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCACGCAGYCATTTTC
----GCAGTGATTT--
 A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
A C G T A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GCACGCAGYCATTTTC
---GTCCGCCATTA--
 A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GCACGCAGYCATTTTC
----CCAGACAG----
 A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCACGCAGYCATTTTC
CGCCCCCTGACA-----
 A C G T A C T G A T G C G T C A A G T C T C A G A G T C C G T A A C T G A G C T A G T C C G T A A C G T A C G T A C G T G A C T A G T C
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T A C G T