Information for 3-CGCAGCCCBGGAGACA (Motif 6)

A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
Reverse Opposite:
A G C T C T A G A C G T A G T C A C G T A G T C A G T C T A C G A T C G A C T G A T C G A G T C A C G T A T C G A T G C A C T G
p-value:1e-11
log p-value:-2.685e+01
Information Content per bp:1.844
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.5 +/- 21.1bp
Average Position of motif in Background50.4 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:CGCAGCCCBGGAGACA
--------CGGAGC--
 A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CGCAGCCCBGGAGACA
CACAGN----------
 A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CGCAGCCCBGGAGACA
TCCCAGMCRAGCCCC--
 A C G T A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CGCAGCCCBGGAGACA
---AGGCCTNG-----
 A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCCCBGGAGACA
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CGCAGCCCBGGAGACA
CGCAGCTGCG------
 A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CGCAGCCCBGGAGACA
TGCGCAGGCGC-------
 A C G T A C G T A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.48
Offset:3
Orientation:forward strand
Alignment:CGCAGCCCBGGAGACA
---AGGCCTAG-----
 A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-CGCAGCCCBGGAGACA------
ACTGACCCTTGGTTACCACAAAG
 A C G T A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.48
Offset:2
Orientation:forward strand
Alignment:CGCAGCCCBGGAGACA
--CAGCC---------
 A G T C A T C G A T G C C G T A A C T G A T G C A G T C A T G C A G T C A C T G A C T G C G T A A C T G G T C A A G T C C T G A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T