Information for 1-GYTCYGCWAGAWT (Motif 3)

A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T
Reverse Opposite:
C G T A C G T A C G A T A G T C A C G T C G A T A C T G A G T C C T G A A C T G C G T A C T A G A G T C
p-value:1e-13
log p-value:-3.099e+01
Information Content per bp:1.872
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.2 +/- 27.8bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GYTCYGCWAGAWT
GCTCCG-------
 A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GYTCYGCWAGAWT-------
TTTMCGCTTSABTGAACACN
 A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GYTCYGCWAGAWT
DCTCAGCAGG---
 A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

POL001.1_MTE/Jaspar

Match Rank:4
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GYTCYGCWAGAWT
NCGACCGCTCCGCTCGAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GYTCYGCWAGAWT
GTTGCGCAAT---
 A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T
T C A G A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A C G T A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GYTCYGCWAGAWT---
-TTGACCGAGAATTCC
 A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T A C G T A C G T A C G T
A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GYTCYGCWAGAWT
HWWGTCAGCAWWTTT
 A C G T A C G T A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T
G T A C C G T A C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A C G A T G C A T G C A T G A C T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GYTCYGCWAGAWT
GAGCACAGCAGGACA
 A C G T A C G T A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PAX1/MA0779.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GYTCYGCWAGAWT---
CGTCACGCATGACTGCA
 A C G T A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

HSF2/MA0770.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GYTCYGCWAGAWT-
-TTCTAGAACGTTC
 A C T G A G T C A C G T A G T C G A C T A C T G A G T C C G T A C G T A A C T G C G T A G C A T A C G T A C G T
A C G T C G A T C A G T T G A C A G C T T C G A C T A G G T C A C G T A A G T C C T A G C G A T G A C T A G T C