Information for 6-KGTTAATKGC (Motif 14)

A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C
Reverse Opposite:
A C T G G A T C G T C A C T G A A G C T A G C T T C G A C G T A A G T C G T C A
p-value:1e-8
log p-value:-1.948e+01
Information Content per bp:1.697
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.10%
Number of Background Sequences with motif602.7
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets48.0 +/- 29.0bp
Average Position of motif in Background51.1 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0063.1_Hoxb8/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--KGTTAATKGC----
TTTATTAATTGCNNGN
 A C G T A C G T A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:KGTTAATKGC-
-GTTAATGGCC
 A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PH0073.1_Hoxc9/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--KGTTAATKGC----
NNAATTAATGACCNNN
 A C G T A C G T A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-KGTTAATKGC---
AGGTCANTGACCTN
 A C G T A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C A C G T A C G T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:KGTTAATKGC--
RGTTAGTGCCCY
 A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C A C G T A C G T
C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T

Hmx1/MA0896.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---KGTTAATKGC----
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---KGTTAATKGC----
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-KGTTAATKGC
NTGTCAN----
 A C G T A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----KGTTAATKGC
NCNTTTGTTATTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--KGTTAATKGC
CCTGTCAA----
 A C G T A C G T A C G T A C T G C G A T A G C T C T G A T C G A A G C T C A G T C T A G A G T C
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T