Information for 5-AGGASASWGSACWSAG (Motif 20)

C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
Reverse Opposite:
A G T C A C G T A T G C C G A T A T C G A C G T A T C G A G T C C G A T A T C G A C G T A T C G G A C T A G T C A G T C A C G T
p-value:1e-6
log p-value:-1.506e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.5 +/- 13.4bp
Average Position of motif in Background54.2 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGGASASWGSACWSAG
TAGGGCAAAGGTCA---
 A C G T C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGGASASWGSACWSAG
GTAGGGCAAAGGTCA---
 A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGGASASWGSACWSAG
GAGGTCAAAGGTCA---
 A C G T C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGGASASWGSACWSAG
AGGTCANTGACCTN--
 C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGGASASWGSACWSAG
TRAGGTCA----------
 A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGGASASWGSACWSAG
AAGGTCAC---------
 A C G T C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGGASASWGSACWSAG--
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

NR2C2/MA0504.1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGGASASWGSACWSAG
AGGGGTCAGAGGTCA---
 A C G T A C G T C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGGASASWGSACWSAG
AATCGCACTGCATTCCG
 A C G T C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGGASASWGSACWSAG
-TGACANARRCCAGRC
 C G T A A C T G A C T G C G T A A T G C C G T A A T G C C G T A A C T G A T G C G T C A A T G C C G T A T A C G C G T A A C T G
A C G T C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C