Information for 2-GACCTGTCTTTCCCTG (Motif 6)

A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
Reverse Opposite:
A G T C G C T A A C T G C T A G A C T G G T C A T C G A G C T A C A T G C G T A A T G C C G T A A C T G A C T G C G A T A G T C
p-value:1e-11
log p-value:-2.549e+01
Information Content per bp:1.798
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.4 +/- 29.4bp
Average Position of motif in Background38.8 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0140.1_Pknox1/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GACCTGTCTTTCCCTG
AAAGACCTGTCAATCC---
 A C G T A C G T A C G T A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GACCTGTCTTTCCCTG
TGACCTTTCGTGACCTT
 A C G T A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GACCTGTCTTTCCCTG
TGACCTNTAGTAACCC-
 A C G T A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C A C G T

PH0104.1_Meis2/Jaspar

Match Rank:4
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GACCTGTCTTTCCCTG
AAAGACCTGTCAATAC---
 A C G T A C G T A C G T A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GACCTGTCTTTCCCTG
AAGCACCTGTCAATAT---
 A C G T A C G T A C G T A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:6
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GACCTGTCTTTCCCTG
AATTACCTGTCAATAC---
 A C G T A C G T A C G T A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GACCTGTCTTTCCCTG
TGWCCTCARNTGACC--
 A C G T A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GACCTGTCTTTCCCTG
AACGAGCTGTCAATAC---
 A C G T A C G T A C G T A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GACCTGTCTTTCCCTG
NNNNTGACCTTTNNNN-----
 A C G T A C G T A C G T A C G T A C G T A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GACCTGTCTTTCCCTG
--GCTGTG--------
 A C T G G C T A G T A C A G T C A C G T A T C G A C G T G T A C C A G T A C G T A C G T A G T C A G T C A G T C C G A T A C T G
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T