Information for 9-TAGGCCCATT (Motif 26)

A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T
Reverse Opposite:
G T C A C G T A C G A T A C T G A C T G T A C G A G T C A G T C A C G T C T G A
p-value:1e-8
log p-value:-1.887e+01
Information Content per bp:1.867
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif41.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets43.8 +/- 26.5bp
Average Position of motif in Background51.7 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TAGGCCCATT----
NNGCACCTTTCTCC
 A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TAGGCCCATT-------
TGTTCCCATTGTGTACT
 A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TAGGCCCATT---
---GGCCATTAAC
 A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TAGGCCCATT
CTAGGCCT---
 A C G T A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TAGGCCCATT
CNAGGCCT---
 A C G T A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TAGGCCCATT--
AAGCATACGCCCAACTT
 A C G T A C G T A C G T A C G T A C G T A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TAGGCCCATT---
-----CCTTTGTT
 A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TAGGCCCATT-----
-----CCATTGTTYB
 A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TAGGCCCATT---
-----CCWTTGTY
 A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TAGGCCCATT----
----NCCATTGTTC
 A G C T G T C A A C T G C T A G A G T C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C