Information for 22-CGGCKGSCTCGGR (Motif 38)

A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A
Reverse Opposite:
A G C T A T G C A G T C A C T G C G T A T A C G A T G C A G T C T G C A A C T G A G T C G T A C A C T G
p-value:1e-6
log p-value:-1.468e+01
Information Content per bp:1.822
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif36.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets49.2 +/- 23.6bp
Average Position of motif in Background53.0 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGGCKGSCTCGGR
-GGCGCGCT----
 A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CGGCKGSCTCGGR
CAGCAGCTGN------
 A C G T A C G T A C G T A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CGGCKGSCTCGGR
AGCAGCTGCTNN---
 A C G T A C G T A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CGGCKGSCTCGGR
HCAGCTGDTN----
 A C G T A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CGGCKGSCTCGGR--
-GGCGGGGGCGGGGG
 A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A A C G T A C G T
A C G T A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G

POL001.1_MTE/Jaspar

Match Rank:6
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CGGCKGSCTCGGR-
NCGACCGCTCCGCTCGAAA
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CGGCKGSCTCGGR-
--GCTGASTCAGCA
 A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A A C G T
A C G T A C G T T C A G T A G C G A C T C A T G C T G A A T C G G C A T G T A C C G T A A C T G T A G C T G C A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CGGCKGSCTCGGR
NAACAGCTGG------
 A C G T A C G T A C G T A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CGGCKGSCTCGGR
GCAGCTGTNN----
 A C G T A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A
T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CGGCKGSCTCGGR
CAGCTGNT-----
 A G T C A C T G A C T G A G T C A C G T A C T G A T C G A T G C C G A T A G T C A C T G A T C G T C G A
G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T