Information for 2-AARAGGCMAGCAG (Motif 3)

C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
Reverse Opposite:
A T G C C A G T A C T G A G T C A G C T C A G T A C T G A G T C G A T C A C G T A G C T A C G T A C G T
p-value:1e-15
log p-value:-3.467e+01
Information Content per bp:1.894
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.4 +/- 19.1bp
Average Position of motif in Background61.2 +/- 11.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AARAGGCMAGCAG
--AAGGCAAGTGT
 C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AARAGGCMAGCAG
GGGRAARRGRMCAGMTG
 A C G T A C G T A C G T A C G T C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AARAGGCMAGCAG
AAAAGTCAA----
 C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:4
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---AARAGGCMAGCAG
ANGNAAAGGTCA----
 A C G T A C G T A C G T C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AARAGGCMAGCAG
CAAAGGTCAG---
 C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AARAGGCMAGCAG
CAAAGGTCAAGGG
 C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AARAGGCMAGCAG
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AARAGGCMAGCAG
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

SPIC/MA0687.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AARAGGCMAGCAG
AAAAAGAGGAAGTA-
 A C G T A C G T C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A A C G T

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AARAGGCMAGCAG
CAAGATGGCGGC--
 A C G T C G T A C G T A T C G A C G T A C T A G A C T G G T A C G T C A C T G A A C T G A G T C G C T A A T C G
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T