Information for 3-GGCAAGGCCA (Motif 12)

A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G G T A C A G T C A C G T A C G T A C T G A G T C A G T C
p-value:1e-10
log p-value:-2.478e+01
Information Content per bp:1.966
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.7 +/- 21.4bp
Average Position of motif in Background60.3 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.81
Offset:2
Orientation:forward strand
Alignment:GGCAAGGCCA--
--CAAGGHCANV
 A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GGCAAGGCCA
NTCAAGGTCA
 A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GGCAAGGCCA
BTCAAGGTCA
 A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GGCAAGGCCA--
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGGCCA
AGGTCAAGGTCA
 A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GGCAAGGCCA-
-TCAAGGTCAN
 A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGGCCA-----
TATTCAAGGTCATGCGA
 A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGGCCA
AAGGCAAGTGT-
 A C G T A C G T A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGCAAGGCCA-
-TCAAGGTCAT
 A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GGCAAGGCCA-
---AAGGTCAC
 A C T G A C T G A G T C C G T A C G T A A C T G A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C