Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-99 | -2.284e+02 | 0.0000 | 171.0 | 23.59% | 1373.3 | 2.91% | motif file (matrix) |
svg |
2 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-86 | -1.989e+02 | 0.0000 | 225.0 | 31.03% | 3131.1 | 6.64% | motif file (matrix) |
svg |
3 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-84 | -1.937e+02 | 0.0000 | 176.0 | 24.28% | 1846.3 | 3.91% | motif file (matrix) |
svg |
4 |
| Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-46 | -1.069e+02 | 0.0000 | 79.0 | 10.90% | 597.0 | 1.27% | motif file (matrix) |
svg |
5 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-34 | -7.944e+01 | 0.0000 | 312.0 | 43.03% | 10550.6 | 22.36% | motif file (matrix) |
svg |
6 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-28 | -6.553e+01 | 0.0000 | 303.0 | 41.79% | 10873.8 | 23.04% | motif file (matrix) |
svg |
7 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-25 | -5.955e+01 | 0.0000 | 168.0 | 23.17% | 4563.1 | 9.67% | motif file (matrix) |
svg |
8 |
| Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer | 1e-25 | -5.944e+01 | 0.0000 | 53.0 | 7.31% | 520.7 | 1.10% | motif file (matrix) |
svg |
9 |
| Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-25 | -5.915e+01 | 0.0000 | 55.0 | 7.59% | 569.2 | 1.21% | motif file (matrix) |
svg |
10 |
| HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer | 1e-23 | -5.338e+01 | 0.0000 | 40.0 | 5.52% | 310.7 | 0.66% | motif file (matrix) |
svg |
11 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-22 | -5.130e+01 | 0.0000 | 102.0 | 14.07% | 2183.7 | 4.63% | motif file (matrix) |
svg |
12 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-20 | -4.779e+01 | 0.0000 | 84.0 | 11.59% | 1636.8 | 3.47% | motif file (matrix) |
svg |
13 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-20 | -4.735e+01 | 0.0000 | 78.0 | 10.76% | 1442.1 | 3.06% | motif file (matrix) |
svg |
14 |
| PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-20 | -4.641e+01 | 0.0000 | 29.0 | 4.00% | 170.7 | 0.36% | motif file (matrix) |
svg |
15 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-17 | -4.035e+01 | 0.0000 | 98.0 | 13.52% | 2395.0 | 5.08% | motif file (matrix) |
svg |
16 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-15 | -3.555e+01 | 0.0000 | 101.0 | 13.93% | 2707.3 | 5.74% | motif file (matrix) |
svg |
17 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-13 | -3.180e+01 | 0.0000 | 129.0 | 17.79% | 4142.1 | 8.78% | motif file (matrix) |
svg |
18 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-12 | -2.853e+01 | 0.0000 | 64.0 | 8.83% | 1488.7 | 3.15% | motif file (matrix) |
svg |
19 |
| GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-12 | -2.793e+01 | 0.0000 | 22.0 | 3.03% | 190.8 | 0.40% | motif file (matrix) |
svg |
20 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-10 | -2.371e+01 | 0.0000 | 67.0 | 9.24% | 1794.7 | 3.80% | motif file (matrix) |
svg |
21 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-9 | -2.286e+01 | 0.0000 | 59.0 | 8.14% | 1502.3 | 3.18% | motif file (matrix) |
svg |
22 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-9 | -2.152e+01 | 0.0000 | 39.0 | 5.38% | 791.3 | 1.68% | motif file (matrix) |
svg |
23 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-9 | -2.118e+01 | 0.0000 | 71.0 | 9.79% | 2082.5 | 4.41% | motif file (matrix) |
svg |
24 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-9 | -2.091e+01 | 0.0000 | 64.0 | 8.83% | 1793.9 | 3.80% | motif file (matrix) |
svg |
25 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-9 | -2.077e+01 | 0.0000 | 80.0 | 11.03% | 2505.1 | 5.31% | motif file (matrix) |
svg |
26 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-8 | -1.874e+01 | 0.0000 | 48.0 | 6.62% | 1225.1 | 2.60% | motif file (matrix) |
svg |
27 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-8 | -1.844e+01 | 0.0000 | 60.0 | 8.28% | 1740.3 | 3.69% | motif file (matrix) |
svg |
28 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.841e+01 | 0.0000 | 30.0 | 4.14% | 567.1 | 1.20% | motif file (matrix) |
svg |
29 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-6 | -1.405e+01 | 0.0000 | 11.0 | 1.52% | 102.7 | 0.22% | motif file (matrix) |
svg |
30 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-5 | -1.366e+01 | 0.0000 | 24.0 | 3.31% | 491.3 | 1.04% | motif file (matrix) |
svg |
31 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-5 | -1.156e+01 | 0.0001 | 22.0 | 3.03% | 483.8 | 1.03% | motif file (matrix) |
svg |
32 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-4 | -1.124e+01 | 0.0001 | 9.0 | 1.24% | 89.5 | 0.19% | motif file (matrix) |
svg |
33 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-4 | -1.103e+01 | 0.0002 | 12.0 | 1.66% | 168.0 | 0.36% | motif file (matrix) |
svg |
34 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-4 | -1.027e+01 | 0.0004 | 52.0 | 7.17% | 1858.5 | 3.94% | motif file (matrix) |
svg |
35 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-4 | -9.657e+00 | 0.0007 | 10.0 | 1.38% | 136.6 | 0.29% | motif file (matrix) |
svg |
36 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-4 | -9.515e+00 | 0.0007 | 65.0 | 8.97% | 2569.0 | 5.44% | motif file (matrix) |
svg |
37 |
| AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer | 1e-3 | -9.014e+00 | 0.0012 | 87.0 | 12.00% | 3778.5 | 8.01% | motif file (matrix) |
svg |
38 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.789e+00 | 0.0015 | 9.0 | 1.24% | 123.6 | 0.26% | motif file (matrix) |
svg |
39 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-3 | -8.091e+00 | 0.0029 | 44.0 | 6.07% | 1633.3 | 3.46% | motif file (matrix) |
svg |
40 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-3 | -7.770e+00 | 0.0038 | 48.0 | 6.62% | 1859.1 | 3.94% | motif file (matrix) |
svg |
41 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -7.641e+00 | 0.0043 | 52.0 | 7.17% | 2074.5 | 4.40% | motif file (matrix) |
svg |
42 |
| Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.500e+00 | 0.0048 | 11.0 | 1.52% | 212.1 | 0.45% | motif file (matrix) |
svg |
43 |
| BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-3 | -7.120e+00 | 0.0068 | 84.0 | 11.59% | 3846.6 | 8.15% | motif file (matrix) |
svg |
44 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-3 | -7.117e+00 | 0.0068 | 167.0 | 23.03% | 8642.6 | 18.32% | motif file (matrix) |
svg |
45 |
| ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer | 1e-3 | -7.054e+00 | 0.0070 | 62.0 | 8.55% | 2657.9 | 5.63% | motif file (matrix) |
svg |
46 |
| MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.052e+00 | 0.0070 | 25.0 | 3.45% | 801.2 | 1.70% | motif file (matrix) |
svg |
47 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -7.036e+00 | 0.0070 | 79.0 | 10.90% | 3581.5 | 7.59% | motif file (matrix) |
svg |
48 |
| Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -6.966e+00 | 0.0072 | 15.0 | 2.07% | 377.4 | 0.80% | motif file (matrix) |
svg |
49 |
| Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -6.943e+00 | 0.0072 | 8.0 | 1.10% | 128.9 | 0.27% | motif file (matrix) |
svg |
50 |
| HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-3 | -6.936e+00 | 0.0072 | 65.0 | 8.97% | 2831.1 | 6.00% | motif file (matrix) |
svg |
51 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-2 | -6.889e+00 | 0.0073 | 37.0 | 5.10% | 1383.9 | 2.93% | motif file (matrix) |
svg |
52 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-2 | -6.787e+00 | 0.0079 | 107.0 | 14.76% | 5190.3 | 11.00% | motif file (matrix) |
svg |
53 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.529e+00 | 0.0100 | 233.0 | 32.14% | 12778.5 | 27.08% | motif file (matrix) |
svg |
54 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-2 | -6.180e+00 | 0.0140 | 52.0 | 7.17% | 2221.3 | 4.71% | motif file (matrix) |
svg |
55 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -6.155e+00 | 0.0140 | 149.0 | 20.55% | 7758.5 | 16.44% | motif file (matrix) |
svg |
56 |
| ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.142e+00 | 0.0140 | 47.0 | 6.48% | 1961.8 | 4.16% | motif file (matrix) |
svg |
57 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.066e+00 | 0.0148 | 43.0 | 5.93% | 1760.2 | 3.73% | motif file (matrix) |
svg |
58 |
| PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.797e+00 | 0.0191 | 26.0 | 3.59% | 929.7 | 1.97% | motif file (matrix) |
svg |
59 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-2 | -5.776e+00 | 0.0191 | 45.0 | 6.21% | 1894.3 | 4.01% | motif file (matrix) |
svg |
60 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.641e+00 | 0.0215 | 37.0 | 5.10% | 1491.4 | 3.16% | motif file (matrix) |
svg |
61 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -5.463e+00 | 0.0253 | 11.0 | 1.52% | 276.2 | 0.59% | motif file (matrix) |
svg |
62 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.434e+00 | 0.0256 | 8.0 | 1.10% | 164.5 | 0.35% | motif file (matrix) |
svg |
63 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -5.433e+00 | 0.0256 | 27.0 | 3.72% | 1005.7 | 2.13% | motif file (matrix) |
svg |
64 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.394e+00 | 0.0258 | 15.0 | 2.07% | 446.1 | 0.95% | motif file (matrix) |
svg |
65 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.185e+00 | 0.0314 | 24.0 | 3.31% | 877.2 | 1.86% | motif file (matrix) |
svg |
66 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-2 | -5.084e+00 | 0.0342 | 14.0 | 1.93% | 418.1 | 0.89% | motif file (matrix) |
svg |
67 |
| Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-2 | -5.053e+00 | 0.0347 | 24.0 | 3.31% | 888.0 | 1.88% | motif file (matrix) |
svg |
68 |
| ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.033e+00 | 0.0349 | 5.0 | 0.69% | 75.7 | 0.16% | motif file (matrix) |
svg |
69 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-2 | -5.013e+00 | 0.0351 | 91.0 | 12.55% | 4565.6 | 9.68% | motif file (matrix) |
svg |
70 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -4.917e+00 | 0.0381 | 37.0 | 5.10% | 1563.7 | 3.31% | motif file (matrix) |
svg |
71 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -4.847e+00 | 0.0402 | 209.0 | 28.83% | 11716.3 | 24.83% | motif file (matrix) |
svg |
72 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-2 | -4.783e+00 | 0.0423 | 6.0 | 0.83% | 112.7 | 0.24% | motif file (matrix) |
svg |
73 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -4.763e+00 | 0.0426 | 57.0 | 7.86% | 2669.5 | 5.66% | motif file (matrix) |
svg |
74 |
| Sp1(Zf)/Promoter/Homer | 1e-2 | -4.708e+00 | 0.0444 | 7.0 | 0.97% | 149.4 | 0.32% | motif file (matrix) |
svg |
75 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-2 | -4.697e+00 | 0.0444 | 63.0 | 8.69% | 3015.1 | 6.39% | motif file (matrix) |
svg |