Information for 8-ABCATGGCTACAG (Motif 9)

C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T C T G A C T A G A G T C A G T C G T C A A C G T C A T G T A C G A C G T
p-value:1e-13
log p-value:-3.031e+01
Information Content per bp:1.775
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif21.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets37.6 +/- 24.0bp
Average Position of motif in Background34.6 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ABCATGGCTACAG
CAAGATGGCGGC--
 A C G T C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ABCATGGCTACAG-
---AGGGTAACAGC
 C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G A C G T
A C G T A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ABCATGGCTACAG
-SCCTAGCAACAG
 C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ABCATGGCTACAG
TTGCCATGGCAACN-
 A C G T A C G T C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

RFX4/MA0799.1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ABCATGGCTACAG
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ABCATGGCTACAG
TTGCCATGGCAACC-
 A C G T A C G T C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

RFX3/MA0798.1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ABCATGGCTACAG
CGTTGCCATGGCAACN-
 A C G T A C G T A C G T A C G T C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ABCATGGCTACAG
GTTGCCATGGCAACCG
 A C G T A C G T A C G T C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ABCATGGCTACAG
GTTGCCATGGCAAC--
 A C G T A C G T A C G T C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

RFX2/MA0600.2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ABCATGGCTACAG
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T C G T A A G T C G T A C C G T A A C G T A C T G C T A G A G T C G A C T G T C A G T A C C G T A A C T G
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T