Information for 17-YCCAGCTCMGTCC (Motif 26)

A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C
Reverse Opposite:
A C T G A C T G C T G A A G T C A C G T A C T G C G T A T A C G A T G C A C G T A C T G A C T G C T A G
p-value:1e-9
log p-value:-2.224e+01
Information Content per bp:1.908
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.5 +/- 24.5bp
Average Position of motif in Background22.6 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:YCCAGCTCMGTCC
----GCTCCG---
A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:YCCAGCTCMGTCC---
----GCTCCGCCCMCY
A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:YCCAGCTCMGTCC-
--CAGCTGTTTCCT
A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C A C G T
A C G T A C G T G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T

POL003.1_GC-box/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:YCCAGCTCMGTCC---
--NAGCCCCGCCCCCN
A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C A C G T A C G T A C G T
A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-YCCAGCTCMGTCC-
TCCCAGMCRAGCCCC
A C G T A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:YCCAGCTCMGTCC
-HCAGCTGDTN--
A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C
A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----YCCAGCTCMGTCC
GGCCYCCTGCTGDGH--
A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--YCCAGCTCMGTCC
CCCCCTGCTGTG---
A C G T A C G T A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:YCCAGCTCMGTCC
CGCAGCTGCG---
A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:YCCAGCTCMGTCC--
---GGCCCCGCCCCC
A G T C A G T C A G T C C G T A A T C G A G T C A C G T A G T C G T C A A C T G A G C T G T A C A G T C A C G T A C G T
A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C