Information for 1-VCCATHAATCATY (Motif 1)

T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C
Reverse Opposite:
C T A G C G T A C G A T C T A G C G T A C A G T C A G T C A G T C T G A G A C T C A T G C T A G A G T C
p-value:1e-115
log p-value:-2.659e+02
Information Content per bp:1.620
Number of Target Sequences with motif192.0
Percentage of Target Sequences with motif26.48%
Number of Background Sequences with motif1480.2
Percentage of Background Sequences with motif3.14%
Average Position of motif in Targets50.8 +/- 22.1bp
Average Position of motif in Background48.7 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:VCCATHAATCATY
GCCATAAATCA--
 T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.95
Offset:1
Orientation:forward strand
Alignment:VCCATHAATCATY
-TCATCAATCA--
 T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C
A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:VCCATHAATCATY
GYCATCMATCAT-
 T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-VCCATHAATCATY
RGCCATYAATCA--
 A C G T T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-VCCATHAATCATY
GGCCATAAATCA--
 A C G T T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-VCCATHAATCATY
GGCCATAAATCA--
 A C G T T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-VCCATHAATCATY
GGCCATAAATCAC-
 A C G T T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.87
Offset:1
Orientation:forward strand
Alignment:VCCATHAATCATY
-CCATCAATCAAA
 T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C
A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-VCCATHAATCATY--
GAAGATCAATCACTTA
 A C G T T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-VCCATHAATCATY--
GAAGATCAATCACTAA
 A C G T T C A G G A T C G T A C C T G A A G C T G T C A G T C A G T C A A C G T G A T C G C T A G C A T G A T C A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A