Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 591)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48126)	% of Background Sequences with Motif
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-36	-8.366e+01	0.0000	107.0	18.10%	2016.5	4.19%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-35	-8.081e+01	0.0000	99.0	16.75%	1781.9	3.70%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-34	-8.009e+01	0.0000	85.0	14.38%	1305.3	2.71%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-34	-7.830e+01	0.0000	80.0	13.54%	1174.4	2.44%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-32	-7.584e+01	0.0000	126.0	21.32%	3017.1	6.26%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-31	-7.248e+01	0.0000	39.0	6.60%	215.8	0.45%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-23	-5.399e+01	0.0000	37.0	6.26%	315.2	0.65%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-21	-4.959e+01	0.0000	32.0	5.41%	248.8	0.52%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-18	-4.171e+01	0.0000	45.0	7.61%	703.2	1.46%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-18	-4.153e+01	0.0000	39.0	6.60%	519.2	1.08%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-16	-3.873e+01	0.0000	55.0	9.31%	1131.6	2.35%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-16	-3.824e+01	0.0000	55.0	9.31%	1144.2	2.38%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-16	-3.717e+01	0.0000	51.0	8.63%	1017.0	2.11%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-14	-3.419e+01	0.0000	58.0	9.81%	1388.4	2.88%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-14	-3.412e+01	0.0000	63.0	10.66%	1610.0	3.34%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-14	-3.358e+01	0.0000	57.0	9.64%	1365.6	2.84%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-14	-3.324e+01	0.0000	17.0	2.88%	89.2	0.19%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-14	-3.250e+01	0.0000	18.0	3.05%	110.0	0.23%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-13	-3.194e+01	0.0000	31.0	5.25%	434.4	0.90%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-11	-2.617e+01	0.0000	14.0	2.37%	82.5	0.17%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-7	-1.778e+01	0.0000	22.0	3.72%	414.3	0.86%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-6	-1.452e+01	0.0000	36.0	6.09%	1148.2	2.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-5	-1.199e+01	0.0001	51.0	8.63%	2130.7	4.42%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-1.096e+01	0.0003	24.0	4.06%	726.3	1.51%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-1.031e+01	0.0005	34.0	5.75%	1283.0	2.66%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.018e+01	0.0005	61.0	10.32%	2902.1	6.03%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-4	-9.242e+00	0.0013	66.0	11.17%	3325.1	6.90%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-8.869e+00	0.0018	56.0	9.48%	2724.6	5.66%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-8.588e+00	0.0023	32.0	5.41%	1291.7	2.68%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-8.433e+00	0.0026	52.0	8.80%	2517.6	5.23%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-8.368e+00	0.0027	25.0	4.23%	916.3	1.90%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-8.226e+00	0.0030	73.0	12.35%	3916.2	8.13%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-8.070e+00	0.0034	21.0	3.55%	721.4	1.50%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-3	-8.059e+00	0.0034	45.0	7.61%	2116.4	4.39%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-8.019e+00	0.0034	68.0	11.51%	3609.9	7.50%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-7.653e+00	0.0048	3.0	0.51%	12.9	0.03%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.083e+00	0.0083	34.0	5.75%	1533.4	3.18%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-6.639e+00	0.0125	67.0	11.34%	3737.6	7.76%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-6.517e+00	0.0138	69.0	11.68%	3893.8	8.08%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-6.184e+00	0.0188	218.0	36.89%	15056.4	31.26%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-6.158e+00	0.0188	42.0	7.11%	2133.2	4.43%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-6.054e+00	0.0203	74.0	12.52%	4316.9	8.96%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-5.722e+00	0.0277	41.0	6.94%	2121.2	4.40%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.722e+00	0.0277	32.0	5.41%	1543.2	3.20%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-5.684e+00	0.0277	20.0	3.38%	820.3	1.70%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-5.461e+00	0.0336	32.0	5.41%	1572.0	3.26%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-5.443e+00	0.0336	83.0	14.04%	5068.0	10.52%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-5.411e+00	0.0339	24.0	4.06%	1079.1	2.24%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-5.160e+00	0.0426	7.0	1.18%	171.3	0.36%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.021e+00	0.0480	12.0	2.03%	420.3	0.87%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.020e+00	0.0480	9.0	1.52%	268.5	0.56%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-5.015e+00	0.0480	19.0	3.21%	814.4	1.69%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-2	-4.962e+00	0.0481	36.0	6.09%	1889.8	3.92%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.914e+00	0.0495	74.0	12.52%	4527.9	9.40%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-4.781e+00	0.0555	21.0	3.55%	954.8	1.98%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-4.731e+00	0.0573	14.0	2.37%	547.3	1.14%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-4.725e+00	0.0573	36.0	6.09%	1921.0	3.99%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-4.661e+00	0.0593	12.0	2.03%	441.3	0.92%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-4.557e+00	0.0647	35.0	5.92%	1876.5	3.90%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-4.534e+00	0.0651	17.0	2.88%	735.7	1.53%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-4.518e+00	0.0651	26.0	4.40%	1293.1	2.69%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-4.251e+00	0.0837	16.0	2.71%	699.6	1.45%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-4.207e+00	0.0861	43.0	7.28%	2471.2	5.13%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-4.152e+00	0.0895	33.0	5.58%	1798.3	3.73%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-4.029e+00	0.0996	77.0	13.03%	4936.2	10.25%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-3.980e+00	0.1031	30.0	5.08%	1621.1	3.37%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.876e+00	0.1126	10.0	1.69%	380.5	0.79%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.839e+00	0.1151	36.0	6.09%	2048.3	4.25%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.835e+00	0.1151	45.0	7.61%	2674.8	5.55%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.739e+00	0.1237	26.0	4.40%	1387.7	2.88%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.688e+00	0.1282	33.0	5.58%	1866.4	3.88%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.683e+00	0.1282	20.0	3.38%	1002.4	2.08%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-3.655e+00	0.1290	12.0	2.03%	510.0	1.06%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.646e+00	0.1290	36.0	6.09%	2079.9	4.32%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-3.626e+00	0.1292	50.0	8.46%	3068.7	6.37%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-3.497e+00	0.1450	33.0	5.58%	1896.7	3.94%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-3.460e+00	0.1486	27.0	4.57%	1492.8	3.10%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.448e+00	0.1486	15.0	2.54%	710.4	1.48%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-3.376e+00	0.1575	24.0	4.06%	1302.6	2.70%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.367e+00	0.1575	32.0	5.41%	1848.2	3.84%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.338e+00	0.1595	33.0	5.58%	1922.5	3.99%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.280e+00	0.1671	16.0	2.71%	790.1	1.64%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-3.279e+00	0.1671	66.0	11.17%	4309.4	8.95%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.132e+00	0.1891	16.0	2.71%	806.3	1.67%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-3.095e+00	0.1939	54.0	9.14%	3472.3	7.21%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-3.055e+00	0.1995	28.0	4.74%	1622.5	3.37%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-3.032e+00	0.2018	33.0	5.58%	1975.9	4.10%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.017e+00	0.2026	26.0	4.40%	1491.0	3.10%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-3.013e+00	0.2026	5.0	0.85%	160.8	0.33%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-3.006e+00	0.2026	25.0	4.23%	1423.8	2.96%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.934e+00	0.2127	2.0	0.34%	30.4	0.06%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.856e+00	0.2276	11.0	1.86%	517.3	1.07%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-2.829e+00	0.2312	4.0	0.68%	118.6	0.25%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.825e+00	0.2312	6.0	1.02%	223.9	0.46%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-2.801e+00	0.2329	24.0	4.06%	1386.2	2.88%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.681e+00	0.2598	26.0	4.40%	1545.4	3.21%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-2.597e+00	0.2795	18.0	3.05%	1005.7	2.09%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.590e+00	0.2795	12.0	2.03%	607.0	1.26%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.589e+00	0.2795	47.0	7.95%	3080.8	6.40%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.572e+00	0.2795	26.0	4.40%	1564.9	3.25%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-2.512e+00	0.2924	21.0	3.55%	1224.8	2.54%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.385e+00	0.3287	35.0	5.92%	2248.1	4.67%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-2.367e+00	0.3314	4.0	0.68%	139.2	0.29%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.360e+00	0.3314	133.0	22.50%	9746.6	20.24%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-2.334e+00	0.3360	12.0	2.03%	636.6	1.32%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-2.304e+00	0.3429	10.0	1.69%	508.2	1.06%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.296e+00	0.3429	34.0	5.75%	2195.3	4.56%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.252e+00	0.3544	22.0	3.72%	1338.9	2.78%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.235e+00	0.3574	12.0	2.03%	648.2	1.35%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.208e+00	0.3639	8.0	1.35%	389.3	0.81%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.159e+00	0.3787	1.0	0.17%	10.1	0.02%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.144e+00	0.3809	5.0	0.85%	209.2	0.43%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.055e+00	0.4127	71.0	12.01%	5053.3	10.49%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.026e+00	0.4212	12.0	2.03%	675.5	1.40%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.019e+00	0.4212	32.0	5.41%	2113.3	4.39%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.011e+00	0.4212	4.0	0.68%	159.1	0.33%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.964e+00	0.4364	5.0	0.85%	222.7	0.46%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.952e+00	0.4380	59.0	9.98%	4169.6	8.66%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.907e+00	0.4541	41.0	6.94%	2815.1	5.85%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.845e+00	0.4795	6.0	1.02%	295.8	0.61%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.819e+00	0.4879	67.0	11.34%	4833.6	10.04%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.788e+00	0.4993	21.0	3.55%	1356.4	2.82%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.752e+00	0.5130	22.0	3.72%	1437.0	2.98%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.698e+00	0.5371	23.0	3.89%	1523.6	3.16%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.661e+00	0.5532	6.0	1.02%	313.5	0.65%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.659e+00	0.5532	3.0	0.51%	122.2	0.25%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.658e+00	0.5532	64.0	10.83%	4664.3	9.68%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.647e+00	0.5532	12.0	2.03%	731.6	1.52%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.647e+00	0.5532	34.0	5.75%	2362.0	4.90%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.643e+00	0.5532	27.0	4.57%	1835.1	3.81%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.609e+00	0.5558	28.0	4.74%	1920.0	3.99%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.606e+00	0.5558	110.0	18.61%	8298.4	17.23%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.602e+00	0.5558	7.0	1.18%	387.5	0.80%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.593e+00	0.5558	21.0	3.55%	1399.8	2.91%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.592e+00	0.5558	2.0	0.34%	68.1	0.14%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.570e+00	0.5569	2.0	0.34%	69.4	0.14%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.569e+00	0.5569	33.0	5.58%	2309.9	4.80%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.567e+00	0.5569	14.0	2.37%	889.3	1.85%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.556e+00	0.5569	17.0	2.88%	1112.0	2.31%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.522e+00	0.5675	38.0	6.43%	2706.2	5.62%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.505e+00	0.5734	4.0	0.68%	196.5	0.41%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.501e+00	0.5734	20.0	3.38%	1346.4	2.80%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.472e+00	0.5843	33.0	5.58%	2339.6	4.86%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.430e+00	0.6052	10.0	1.69%	623.3	1.29%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.429e+00	0.6052	5.0	0.85%	270.9	0.56%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.426e+00	0.6052	20.0	3.38%	1365.0	2.83%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.415e+00	0.6052	4.0	0.68%	204.4	0.42%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.404e+00	0.6052	71.0	12.01%	5323.1	11.05%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.397e+00	0.6052	3.0	0.51%	140.7	0.29%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.384e+00	0.6083	3.0	0.51%	141.5	0.29%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.376e+00	0.6086	22.0	3.72%	1528.3	3.17%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.370e+00	0.6086	16.0	2.71%	1077.9	2.24%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.361e+00	0.6103	31.0	5.25%	2221.8	4.61%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.350e+00	0.6124	21.0	3.55%	1459.1	3.03%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.341e+00	0.6141	24.0	4.06%	1690.6	3.51%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.331e+00	0.6166	1.0	0.17%	25.9	0.05%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.329e+00	0.6166	22.0	3.72%	1541.2	3.20%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.321e+00	0.6166	5.0	0.85%	282.5	0.59%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.305e+00	0.6206	2.0	0.34%	83.3	0.17%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.305e+00	0.6206	61.0	10.32%	4583.3	9.52%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.296e+00	0.6206	11.0	1.86%	720.7	1.50%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.284e+00	0.6222	7.0	1.18%	429.8	0.89%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.284e+00	0.6222	3.0	0.51%	149.5	0.31%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.282e+00	0.6222	36.0	6.09%	2635.3	5.47%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.280e+00	0.6222	137.0	23.18%	10644.7	22.10%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.270e+00	0.6222	5.0	0.85%	288.4	0.60%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.269e+00	0.6222	70.0	11.84%	5311.4	11.03%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.266e+00	0.6222	46.0	7.78%	3422.7	7.11%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.248e+00	0.6222	15.0	2.54%	1030.3	2.14%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.186e+00	0.6538	16.0	2.71%	1121.2	2.33%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.137e+00	0.6831	19.0	3.21%	1365.8	2.84%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.135e+00	0.6831	24.0	4.06%	1753.6	3.64%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.135e+00	0.6831	14.0	2.37%	981.6	2.04%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.128e+00	0.6831	8.0	1.35%	529.0	1.10%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.127e+00	0.6831	14.0	2.37%	983.8	2.04%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.110e+00	0.6831	17.0	2.88%	1218.7	2.53%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.110e+00	0.6831	15.0	2.54%	1064.3	2.21%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.108e+00	0.6831	25.0	4.23%	1840.8	3.82%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.106e+00	0.6831	16.0	2.71%	1142.4	2.37%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.097e+00	0.6831	123.0	20.81%	9649.4	20.04%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.093e+00	0.6831	5.0	0.85%	311.8	0.65%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.086e+00	0.6831	4.0	0.68%	239.7	0.50%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.077e+00	0.6831	39.0	6.60%	2952.9	6.13%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.052e+00	0.6909	1.0	0.17%	35.3	0.07%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.022e+00	0.7078	4.0	0.68%	247.1	0.51%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.015e+00	0.7092	44.0	7.45%	3377.4	7.01%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.010e+00	0.7093	16.0	2.71%	1169.4	2.43%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-9.846e-01	0.7233	2.0	0.34%	106.4	0.22%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.814e-01	0.7233	8.0	1.35%	556.9	1.16%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-9.494e-01	0.7414	14.0	2.37%	1030.9	2.14%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-9.334e-01	0.7494	74.0	12.52%	5824.6	12.09%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-9.297e-01	0.7494	40.0	6.77%	3100.3	6.44%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-9.196e-01	0.7519	44.0	7.45%	3425.4	7.11%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-9.169e-01	0.7519	7.0	1.18%	492.5	1.02%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-9.150e-01	0.7519	10.0	1.69%	726.6	1.51%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.128e-01	0.7519	137.0	23.18%	10923.9	22.68%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.095e-01	0.7519	3.0	0.51%	187.1	0.39%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.569e-01	0.7804	1.0	0.17%	45.9	0.10%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.363e-01	0.7926	35.0	5.92%	2746.9	5.70%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.302e-01	0.7934	5.0	0.85%	353.3	0.73%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.301e-01	0.7934	14.0	2.37%	1066.1	2.21%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-8.176e-01	0.7955	49.0	8.29%	3884.2	8.07%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-8.011e-01	0.8048	26.0	4.40%	2039.7	4.24%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.990e-01	0.8048	4.0	0.68%	280.8	0.58%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-7.933e-01	0.8048	14.0	2.37%	1078.0	2.24%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-7.895e-01	0.8048	9.0	1.52%	679.9	1.41%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.718e-01	0.8127	32.0	5.41%	2537.8	5.27%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-7.687e-01	0.8127	3.0	0.51%	206.8	0.43%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.687e-01	0.8127	3.0	0.51%	206.3	0.43%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.628e-01	0.8127	24.0	4.06%	1895.8	3.94%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.622e-01	0.8127	5.0	0.85%	366.5	0.76%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.619e-01	0.8127	3.0	0.51%	208.0	0.43%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.591e-01	0.8127	11.0	1.86%	848.1	1.76%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-7.587e-01	0.8127	8.0	1.35%	607.7	1.26%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.527e-01	0.8127	6.0	1.02%	448.8	0.93%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.436e-01	0.8127	38.0	6.43%	3038.8	6.31%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-7.305e-01	0.8127	10.0	1.69%	777.0	1.61%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.252e-01	0.8127	4.0	0.68%	294.0	0.61%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-7.222e-01	0.8127	2.0	0.34%	133.4	0.28%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.212e-01	0.8127	7.0	1.18%	536.8	1.11%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.137e-01	0.8127	9.0	1.52%	700.6	1.45%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.127e-01	0.8127	63.0	10.66%	5089.0	10.57%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-7.033e-01	0.8127	25.0	4.23%	2004.6	4.16%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-6.803e-01	0.8230	14.0	2.37%	1118.3	2.32%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.793e-01	0.8230	20.0	3.38%	1608.7	3.34%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.745e-01	0.8230	1.0	0.17%	58.2	0.12%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.689e-01	0.8230	11.0	1.86%	877.6	1.82%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-6.685e-01	0.8230	23.0	3.89%	1858.7	3.86%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.572e-01	0.8239	11.0	1.86%	881.4	1.83%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.349e-01	0.8387	7.0	1.18%	559.9	1.16%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.258e-01	0.8428	20.0	3.38%	1633.6	3.39%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.185e-01	0.8453	42.0	7.11%	3443.1	7.15%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.144e-01	0.8453	14.0	2.37%	1144.5	2.38%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.119e-01	0.8453	2.0	0.34%	148.6	0.31%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.975e-01	0.8522	59.0	9.98%	4853.1	10.08%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-5.928e-01	0.8526	5.0	0.85%	404.3	0.84%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.927e-01	0.8526	9.0	1.52%	738.7	1.53%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.881e-01	0.8526	1.0	0.17%	66.9	0.14%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-5.873e-01	0.8526	133.0	22.50%	10921.3	22.68%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.755e-01	0.8530	43.0	7.28%	3556.8	7.39%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.734e-01	0.8530	5.0	0.85%	409.5	0.85%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-5.592e-01	0.8599	30.0	5.08%	2495.0	5.18%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.567e-01	0.8599	20.0	3.38%	1668.4	3.46%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.561e-01	0.8599	30.0	5.08%	2497.9	5.19%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.532e-01	0.8599	108.0	18.27%	8914.9	18.51%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.515e-01	0.8599	3.0	0.51%	244.7	0.51%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.489e-01	0.8599	19.0	3.21%	1589.1	3.30%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.272e-01	0.8663	6.0	1.02%	507.1	1.05%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.268e-01	0.8663	52.0	8.80%	4337.9	9.01%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-5.176e-01	0.8677	6.0	1.02%	510.2	1.06%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.098e-01	0.8710	62.0	10.49%	5178.9	10.75%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.084e-01	0.8710	5.0	0.85%	427.3	0.89%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-5.044e-01	0.8710	107.0	18.10%	8889.9	18.46%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.027e-01	0.8710	14.0	2.37%	1194.5	2.48%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-4.978e-01	0.8710	10.0	1.69%	858.7	1.78%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.882e-01	0.8726	36.0	6.09%	3043.5	6.32%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.839e-01	0.8730	11.0	1.86%	949.0	1.97%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-4.735e-01	0.8787	50.0	8.46%	4219.0	8.76%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-4.714e-01	0.8787	18.0	3.05%	1548.5	3.22%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.673e-01	0.8787	40.0	6.77%	3393.2	7.05%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.622e-01	0.8787	2.0	0.34%	174.6	0.36%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.596e-01	0.8787	3.0	0.51%	265.2	0.55%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.586e-01	0.8787	8.0	1.35%	704.0	1.46%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.534e-01	0.8787	5.0	0.85%	444.9	0.92%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-4.478e-01	0.8787	3.0	0.51%	268.5	0.56%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.475e-01	0.8787	1.0	0.17%	84.0	0.17%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-4.339e-01	0.8801	1.0	0.17%	85.3	0.18%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.339e-01	0.8801	1.0	0.17%	85.9	0.18%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-4.273e-01	0.8826	1.0	0.17%	86.1	0.18%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.159e-01	0.8895	13.0	2.20%	1154.6	2.40%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-4.069e-01	0.8942	15.0	2.54%	1331.8	2.77%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.042e-01	0.8942	4.0	0.68%	371.9	0.77%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.005e-01	0.8942	7.0	1.18%	640.0	1.33%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.985e-01	0.8942	2.0	0.34%	188.8	0.39%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.902e-01	0.8960	12.0	2.03%	1082.3	2.25%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.898e-01	0.8960	3.0	0.51%	284.5	0.59%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.893e-01	0.8960	6.0	1.02%	556.4	1.16%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.891e-01	0.8960	50.0	8.46%	4303.4	8.94%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.891e-01	0.8960	29.0	4.91%	2536.8	5.27%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.891e-01	0.8960	16.0	2.71%	1428.4	2.97%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.869e-01	0.8960	6.0	1.02%	557.4	1.16%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.852e-01	0.8960	19.0	3.21%	1688.4	3.51%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.730e-01	0.8960	1.0	0.17%	95.6	0.20%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.701e-01	0.8960	2.0	0.34%	195.5	0.41%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-3.679e-01	0.8960	6.0	1.02%	565.6	1.17%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.605e-01	0.8960	3.0	0.51%	293.7	0.61%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.550e-01	0.8960	10.0	1.69%	927.5	1.93%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.549e-01	0.8960	2.0	0.34%	199.8	0.41%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.418e-01	0.8960	7.0	1.18%	667.2	1.39%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.318e-01	0.9007	7.0	1.18%	672.1	1.40%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.222e-01	0.9063	5.0	0.85%	494.3	1.03%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.174e-01	0.9076	1.0	0.17%	106.4	0.22%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.156e-01	0.9076	5.0	0.85%	497.3	1.03%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-3.098e-01	0.9083	2.0	0.34%	212.1	0.44%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.083e-01	0.9083	1.0	0.17%	108.1	0.22%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.036e-01	0.9083	48.0	8.12%	4235.3	8.79%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.958e-01	0.9118	4.0	0.68%	412.9	0.86%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.910e-01	0.9131	2.0	0.34%	218.2	0.45%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.870e-01	0.9137	1.0	0.17%	113.2	0.24%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.867e-01	0.9137	8.0	1.35%	788.1	1.64%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.771e-01	0.9167	8.0	1.35%	794.0	1.65%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.731e-01	0.9173	13.0	2.20%	1248.7	2.59%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.706e-01	0.9173	2.0	0.34%	225.1	0.47%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.599e-01	0.9233	1.0	0.17%	120.1	0.25%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.548e-01	0.9250	7.0	1.18%	716.9	1.49%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.523e-01	0.9250	3.0	0.51%	334.2	0.69%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.393e-01	0.9333	9.0	1.52%	912.5	1.89%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.292e-01	0.9397	4.0	0.68%	445.6	0.93%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.245e-01	0.9411	2.0	0.34%	243.7	0.51%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.232e-01	0.9411	3.0	0.51%	348.2	0.72%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.088e-01	0.9499	4.0	0.68%	457.1	0.95%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.083e-01	0.9499	1.0	0.17%	136.5	0.28%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.057e-01	0.9499	52.0	8.80%	4725.4	9.81%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.913e-01	0.9574	15.0	2.54%	1506.1	3.13%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.867e-01	0.9588	58.0	9.81%	5276.9	10.96%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.845e-01	0.9588	5.0	0.85%	573.9	1.19%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.794e-01	0.9597	1.0	0.17%	147.7	0.31%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.756e-01	0.9603	7.0	1.18%	777.0	1.61%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.754e-01	0.9603	5.0	0.85%	580.2	1.20%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.723e-01	0.9603	1.0	0.17%	150.4	0.31%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.714e-01	0.9603	52.0	8.80%	4792.9	9.95%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.681e-01	0.9603	2.0	0.34%	271.4	0.56%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.671e-01	0.9603	13.0	2.20%	1351.3	2.81%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.658e-01	0.9603	29.0	4.91%	2796.7	5.81%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.618e-01	0.9603	16.0	2.71%	1634.3	3.39%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.558e-01	0.9603	8.0	1.35%	892.2	1.85%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.532e-01	0.9603	2.0	0.34%	280.6	0.58%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.507e-01	0.9603	1.0	0.17%	160.6	0.33%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.507e-01	0.9603	1.0	0.17%	160.6	0.33%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.448e-01	0.9603	12.0	2.03%	1286.2	2.67%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.406e-01	0.9603	4.0	0.68%	507.2	1.05%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.252e-01	0.9674	28.0	4.74%	2784.2	5.78%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.171e-01	0.9723	21.0	3.55%	2166.6	4.50%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.114e-01	0.9750	1.0	0.17%	183.5	0.38%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.047e-01	0.9785	85.0	14.38%	7818.8	16.23%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-8.379e-02	0.9963	1.0	0.17%	205.9	0.43%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-7.371e-02	1.0000	1.0	0.17%	215.8	0.45%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.342e-02	1.0000	2.0	0.34%	351.3	0.73%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.642e-02	1.0000	8.0	1.35%	1027.2	2.13%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.345e-02	1.0000	2.0	0.34%	365.6	0.76%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.337e-02	1.0000	7.0	1.18%	930.2	1.93%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.066e-02	1.0000	49.0	8.29%	4870.8	10.11%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-5.411e-02	1.0000	4.0	0.68%	623.1	1.29%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.930e-02	1.0000	74.0	12.52%	7143.1	14.83%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.489e-02	1.0000	54.0	9.14%	5406.9	11.23%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.234e-02	1.0000	13.0	2.20%	1608.5	3.34%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.314e-02	1.0000	39.0	6.60%	4221.5	8.77%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.096e-02	1.0000	2.0	0.34%	470.5	0.98%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.283e-02	1.0000	46.0	7.78%	5014.2	10.41%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.970e-03	1.0000	1.0	0.17%	472.8	0.98%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	27.6	0.06%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	28.0	0.06%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	167.6	0.35%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	21.7	0.05%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	7.7	0.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	12.5	0.03%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	28.0	0.06%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	52.8	0.11%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	25.8	0.05%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	0.000e+00	1.0000	0.0	0.00%	153.7	0.32%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	4.3	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	15.6	0.03%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	36.9	0.08%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	0.000e+00	1.0000	0.0	0.00%	125.8	0.26%