Information for 16-RCCMTGCAGAAKK (Motif 27)

C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G
Reverse Opposite:
G T A C G T A C A C G T A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G C T A G A G C T
p-value:1e-7
log p-value:-1.715e+01
Information Content per bp:1.876
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.4 +/- 28.7bp
Average Position of motif in Background59.0 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--RCCMTGCAGAAKK--
AAAATATGCATAATAAA
 A C G T A C G T C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:RCCMTGCAGAAKK
--CCTGCTGAGH-
 C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RCCMTGCAGAAKK--
CAATTGCAAAAATAT
 C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RCCMTGCAGAAKK--
---ATGCATAATTCA
 C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----RCCMTGCAGAAKK
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-RCCMTGCAGAAKK
CCCCCTGCTGTG--
 A C G T C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---RCCMTGCAGAAKK--
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:RCCMTGCAGAAKK--
DCHCAGCAGGRGGCC
 C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:RCCMTGCAGAAKK---
-WYATGCATWATGCAT
 C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:RCCMTGCAGAAKK
---ATGAATATTC
 C T G A A G T C A G T C G T C A A C G T A C T G A G T C C G T A A C T G C G T A C G T A A C T G A C T G
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C