Information for 11-CCAGGMCTGGCTGGGG (Motif 11)

A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G
Reverse Opposite:
A G T C G T A C T A G C A G T C G T C A A T C G A T G C A G T C G T C A A C T G A C T G A T G C A G T C A C G T A T C G A T C G
p-value:1e-11
log p-value:-2.715e+01
Information Content per bp:1.761
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif17.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets67.6 +/- 19.7bp
Average Position of motif in Background47.4 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCAGGMCTGGCTGGGG
GTCATGCHTGRCTGS--
 A C G T A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCAGGMCTGGCTGGGG
-GGGGCTYGKCTGGGA
 A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G
A C G T C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCAGGMCTGGCTGGGG
NGTCACGCTTGGCTGC--
 A C G T A C G T A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CCAGGMCTGGCTGGGG--
------NTGGGTGTGGCC
 A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G A T A C T G A C T G A C T G G A C T A C T G A C G T A C T G A C T G G A T C G A T C

INSM1/MA0155.1/Jaspar

Match Rank:5
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CCAGGMCTGGCTGGGG---
-------TGTCAGGGGGCG
 A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CCAGGMCTGGCTGGGG-
-------TGGGTGTGGC
 A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCAGGMCTGGCTGGGG
-CAGGCCNNGGCCNN-
 A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G
A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C A C G T

Klf4/MA0039.2/Jaspar

Match Rank:8
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CCAGGMCTGGCTGGGG-
-------TGGGTGGGGC
 A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T T C A G C T A G A T C G G A C T C A T G A C T G C T A G A C T G A G T C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCAGGMCTGGCTGGGG
--AGGCCTNG------
 A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CCAGGMCTGGCTGGGG--
-------TGGGTGTGGCN
 A T G C A T G C C G T A A C T G A T C G G T A C G T A C C A G T A C T G T A C G A T G C A C G T A C T G A T C G A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G A C T G A C T G G A C T A C T G C A G T C T A G A C T G A G T C G A T C