Information for 9-TTTTGCAGAC (Motif 20)

A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C
Reverse Opposite:
T C A G C A G T A G T C G A C T C T A G G A T C C G T A G T C A C T G A G T C A
p-value:1e-10
log p-value:-2.507e+01
Information Content per bp:1.732
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif6.89%
Number of Background Sequences with motif1151.8
Percentage of Background Sequences with motif2.37%
Average Position of motif in Targets49.3 +/- 23.5bp
Average Position of motif in Background49.5 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0145.1_Mafb_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTTTGCAGAC-
ANATTTTTGCAANTN
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PB0041.1_Mafb_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTTTGCAGAC-----
AAATTTGCTGACTTAGA
 A C G T A C G T A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C A C G T A C G T A C G T A C G T A C G T
G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C

NFATC2/MA0152.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTTTGCAGAC
TTTTCCA---
 A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C
C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TTTTGCAGAC----
----CCAGACRSVB
 A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

MTF1/MA0863.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TTTTGCAGAC-----
-TTTGCACACGGCAC
 A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTTTGCAGAC-----
NNTTTGCACACGGCCC
 A C G T A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C A C G T A C G T A C G T A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TTTTGCAGAC--
----BCAGACWA
 A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTTTGCAGAC
AATTTGCTGAC
 A C G T A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TTTTGCAGAC--
----CCAGACAG
 A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTTTGCAGAC--
TNTAATTTGCATACNA
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T C G A T C T A G A G T C C T G A C T A G G T C A A G T C A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A