Information for 1-CATSTGAATGACTGCC (Motif 4)

A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
Reverse Opposite:
A C T G C T A G A G T C C G T A A T C G A G C T G T A C C G T A A C G T A G C T A G T C C G T A A T C G C G T A A C G T C T A G
p-value:1e-13
log p-value:-3.065e+01
Information Content per bp:1.825
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 16.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CATSTGAATGACTGCC
ACTATGAATGAATGAT
 A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CATSTGAATGACTGCC
----TGAGTGACAGSC
 A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CATSTGAATGACTGCC
---NTGATTGACAGN-
 A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CATSTGAATGACTGCC
---BTGABTGACAGS-
 A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CATSTGAATGACTGCC
NTTNTATGAATGTGNNC-
 A C G T A C G T A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CATSTGAATGACTGCC
------CATGAC----
 A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CATSTGAATGACTGCC
---GTTAATGGCC---
 A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CATSTGAATGACTGCC
NNAATTAATGACCNNN
 A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CATSTGAATGACTGCC
-----AAATCACTGC-
 A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CATSTGAATGACTGCC
WATGCAAATGAG----
 A G T C G T C A A C G T A T C G A C G T C T A G C T G A C G T A A C G T A C T G C T G A A T G C A C G T C T A G A G T C A G T C
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T A C G T