Information for 12-CGCCCAGCTGGGC (Motif 18)

G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C A C T G
p-value:1e-8
log p-value:-1.923e+01
Information Content per bp:1.904
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.8 +/- 22.6bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CGCCCAGCTGGGC
GGCCYCCTGCTGDGH
 A C G T A C G T G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CGCCCAGCTGGGC
CCCCCTGCTGTG-
 G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGCCCAGCTGGGC
-NAHCAGCTGD--
 G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C
A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGCCCAGCTGGGC
-NNVCAGCTGB--
 G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C
A C G T C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CGCCCAGCTGGGC
-NAACAGCTGG--
 G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C
A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGCCCAGCTGGGC
GACCCCCCGCTGCGC
 A C G T A C G T G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CGCCCAGCTGGGC-
--NVCAGCTGBBNN
 G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C A C G T
A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGCCCAGCTGGGC
GACCCCCCGCTGTG-
 A C G T A C G T G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CGCCCAGCTGGGC
---ACAGCTGTTN
 G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C
A C G T A C G T A C G T T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T A G T C

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGCCCAGCTGGGC-
CCACACAGCAGGAGA
 A C G T G T A C A C T G A G T C G T A C A G T C C G T A A C T G A G T C C G A T A C T G A C T G A C T G A G T C A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A