Information for 6-AAGGGGCCACTGT (Motif 12)

C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T
Reverse Opposite:
C T G A A G T C C T G A A C T G A C G T A C T G A C T G A G T C G T A C A G T C A G T C A C G T A C G T
p-value:1e-10
log p-value:-2.485e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.6 +/- 10.4bp
Average Position of motif in Background89.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAGGGGCCACTGT
-AGGVNCCTTTGT
 C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T
A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AAGGGGCCACTGT----
-CNNNGCTACTGTANNN
 C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T A C G T A C G T A C G T A C G T
A C G T G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAGGGGCCACTGT-
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0050.1_Osr1_1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AAGGGGCCACTGT----
-TNNTGCTACTGTNNNN
 C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T A C G T A C G T A C G T A C G T
A C G T G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AAGGGGCCACTGT-
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAGGGGCCACTGT
-AGRGGTCA----
 C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAGGGGCCACTGT
-AGGTGTCA----
 C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AAGGGGCCACTGT---
-AGATGCTRCTRCCHT
 C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T A C G T A C G T A C G T
A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AAGGGGCCACTGT-
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AAGGGGCCACTGT------
--AATCGCACTGCATTCCG
 C G T A C G T A A C T G C T A G A C T G A C T G A G T C A G T C C G T A A G T C A G C T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G