Information for 2-SAGCAGGGCARAG (Motif 5)

A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G
Reverse Opposite:
A G T C A C G T A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C T G G T A C A C G T A T C G
p-value:1e-12
log p-value:-2.974e+01
Information Content per bp:1.910
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets70.2 +/- 16.4bp
Average Position of motif in Background47.5 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:SAGCAGGGCARAG----
---TAGGGCAAAGGTCA
 A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:SAGCAGGGCARAG----
--GTAGGGCAAAGGTCA
 A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--SAGCAGGGCARAG
CACAGCAGGGGG---
 A C G T A C G T A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----SAGCAGGGCARAG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----SAGCAGGGCARAG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---SAGCAGGGCARAG
DCTCAGCAGG------
 A C G T A C G T A C G T A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:SAGCAGGGCARAG
--TNNGGGCAG--
 A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----SAGCAGGGCARAG
GAGCACAGCAGGACA---
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:SAGCAGGGCARAG
WDNCTGGGCA---
 A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:SAGCAGGGCARAG----
---TGGGGCAAAGGTCA
 A T G C C G T A A C T G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A