Information for 23-GCTCGCATGCTGC (Motif 32)

A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G A T G C G T C A A C G T A T C G A G T C A T C G C G T A A C T G A G T C
p-value:1e-7
log p-value:-1.622e+01
Information Content per bp:1.839
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.8 +/- 13.4bp
Average Position of motif in Background40.6 +/- 8.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCTCGCATGCTGC--
-CTGGCAGNCTGCCA
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C A C G T A C G T
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCTCGCATGCTGC----
--TCNCCTGCTGNGNNN
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTCGCATGCTGC----
--TNTCCTGCTGTGNNG
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTCGCATGCTGC----
--NNTCCTGCTGTGNNN
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GCTCGCATGCTGC--
-----CCTGCTGAGH
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCTCGCATGCTGC--
-TTGGCATGGTGCCA
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C A C G T A C G T
A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCTCGCATGCTGC----
-TTGGCANNNTGCCAAG
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GCTCGCATGCTGC-
--------GCTGTG
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GCTCGCATGCTGC-
----ACATCCTGNT
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:GCTCGCATGCTGC
-------NGCTN-
 A C T G A G T C C G A T T A G C A C T G A T G C G T C A A C G T A T C G G T A C C G A T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T