Information for 21-GAGGACAAAGGGA (Motif 30)

A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A
Reverse Opposite:
A C G T A T G C A G T C A G T C A G C T A G C T A C G T A T C G A G C T G T A C A G T C A C G T G T A C
p-value:1e-7
log p-value:-1.823e+01
Information Content per bp:1.839
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets61.9 +/- 19.7bp
Average Position of motif in Background55.0 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GAGGACAAAGGGA
-AAAACAAAGG--
 A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGGACAAAGGGA
ARGAGGMCAAAATGW
 A C G T A C G T A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GAGGACAAAGGGA-
TAGGGCAAAGGTCA
 A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAGGACAAAGGGA-
GTAGGGCAAAGGTCA
 A C G T A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGGACAAAGGGA
-GGAACAAAGR--
 A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAGGACAAAGGGA-
TGGGGCAAAGGTCA
 A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGGACAAAGGGA
-ACATCAAAGGNA
 A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A
A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGGACAAAGGGA
-AAAACAATGG--
 A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GAGGACAAAGGGA
---AACAAAGG--
 A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGGACAAAGGGA-
AAAGATCAAAGGGTT
 A C G T A C T G C G T A A C T G A C T G C T G A A T G C C G T A C T G A C T G A C T A G A C T G A T C G C G T A A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T