Information for 16-GCATAGTGCA (Motif 18)

A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A A G T C A C G T C G T A A C G T A C T G A G T C
p-value:1e-2
log p-value:-6.626e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.0 +/- 27.8bp
Average Position of motif in Background73.8 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCATAGTGCA---
ATGCATWATGCATRW
 A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A A C G T A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------GCATAGTGCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCATAGTGCA
ATGCATAATTCA
 A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCATAGTGCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCATAGTGCA---
ATGAATWATTCATGA
 A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A A C G T A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

ZNF143/MA0088.2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCATAGTGCA---
TACCCACAATGCATTG
 A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCATAGTGCA----
GGCAAAAGTCCAATAA
 A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCATAGTGCA-
-CAAAGGTCAG
 A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GCATAGTGCA
AAAATATGCATAATAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCATAGTGCA
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C G T A C T G A G T C C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A